Bioconductor Phylogenetic

Showing : phylogenetic • reset

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6.7k

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ggtree phylogenetic News

updated 9.2 years ago by remi.tournebize ▴ 10 • written 9.2 years ago by Guangchuang Yu ★ 1.2k

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3.6k

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ape bootstrap node phylogenetic tree

8.8 years ago wd ▴ 30

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1.9k

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phylogenetic ggtree calibration fossils times-scale

updated 6.6 years ago by Guangchuang Yu ★ 1.2k • written 6.7 years ago by aelgorriaga • 0

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1.5k

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phylogenetic MacroCAIC

updated 8.2 years ago by Aaron Lun ★ 28k • written 8.2 years ago by Gabi • 0

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1.3k

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edger differential expression phylogenetic comparative methods

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by noah.reid ▴ 10

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1.2k

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linux r phylogenetic computational biology

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by guilherme • 0

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msa phylogenetic

updated 7.4 years ago by UBod ▴ 290 • written 7.4 years ago by vinod.acear ▴ 50

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781

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R bioconductor phylogenetic

6.0 years ago cav3gh • 0

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658

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TreeSummarizedExperiment phylogenetic microbiome SummarizedExperiment

updated 19 months ago by James W. MacDonald 65k • written 19 months ago by Muhammad • 0

9 results • Page 1 of 1

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Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10

Hi Michael, thanks for the answer! I'll have a look : )

Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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