Biostar Phytozome

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biomaRT Rcurl phytozome

updated 3.9 years ago by Mike Smith ★ 6.0k • written 3.9 years ago by s.nielsen ▴ 20

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biomaRt getBM Phytozome Chlamydomonas

updated 3.0 years ago by Mike Smith ★ 6.0k • written 3.0 years ago by ytlin610 ▴ 10

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Zea_mays Attributes biomaRt Phytozome

updated 13 months ago by SK • 0 • written 14 months ago by s.k.tepler ▴ 10

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Biomart phytozome

3.1 years ago l.willianpacheco • 0

4 results • Page 1 of 1

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Answer: Compare and filter three BAM files by swbarnes2 ★ 1.2k

If you think you have a mix of three different organisms in the ix, the better way to do this is to make one reference with all three genom…

Comment: enrichKEGG results for non-model organism by Aciole.D • 0

If anyone still wondering about this: You can filter your 'kegg' object based on a list of target pathways. Look at these fields: `kegg@…

Comment: KEGG enrichment in R and gene IDs by Laia ▴ 10

I could finally solve this and I could get KEGG results :) Thank you so much for your help and quick replies. Best, Laia

Comment: KEGG enrichment in R and gene IDs by James W. MacDonald 62k

This part is the main issue. ``` ‘GOSemSim’ 2.22.0 is already loaded, but >= 2.23.1 is required ``` You should restart R and then re-insta…

Comment: Correct script for featurecounts in Rsubread by rmoorehe • 0

Thanks for the help. I was able to work through it using the bioconductor link. For some reason, I thought I had to create a new tab delimi…

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Answer: How edgeR estimate the common dispersion?

Comment: RUVr batch correction doubling number of DEGs

Answer: RUVr batch correction doubling number of DEGs

A: LogFC: how do you determine the cutoff for differentially expressed genes?

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