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piano
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3
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piano runGSA with input from DESEQ2
deseq2
gene ontology
piano
7.4 years ago
simonp.snoeck
• 0
3
votes
3
replies
1.6k
views
Error while running piano's runGSA
piano
runGSA
updated 7.8 years ago by
Leif Väremo
▴ 70 • written 7.8 years ago by
rubi
▴ 110
0
votes
1
reply
1.1k
views
Mixing list from Piano package output
Piano
List
updated 8.9 years ago by
Leif Väremo
▴ 70 • written 8.9 years ago by
nonCodingGene
▴ 10
2
votes
2
replies
1.2k
views
Using GeneSetCollection objects of GSEABase in piano package
piano
gseabase
7.2 years ago
Lluís Revilla Sancho
▴ 730
9
votes
7
replies
19k
views
Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 3 months ago by
amin8w
▴ 10 • written 6.7 years ago by
sina.nassiri
▴ 130
3
votes
2
replies
1.1k
views
How is microarray normalization done in PIANO?
piano
microarray
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
rf
• 0
0
votes
9
replies
1.7k
views
unable to load rsbml for piano reporter metabolite analysis
rsbml
piano
libsbml
gene set enrichment analysis
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
jan.strauss
• 0
2
votes
4
replies
1.3k
views
Running time of piano's runGSA
piano
runGSA
runtime
updated 7.2 years ago by
Leif Väremo
▴ 70 • written 7.2 years ago by
rubi
▴ 110
3
votes
8
replies
2.4k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy
limma
piano
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
abolfazl.nikakhtar
• 0
0
votes
5
replies
2.3k
views
loadGSC() Piano package
piano
updated 9.0 years ago by
Leif Väremo
▴ 70 • written 9.0 years ago by
nonCodingGene
▴ 10
10 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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