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piano
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9
votes
7
replies
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Single Sample GSEA (ssGSEA) and dynamic range of expression
ssgsea
gsva
piano
egsea
updated 4 months ago by
amin8w
▴ 10 • written 6.7 years ago by
sina.nassiri
▴ 130
3
votes
8
replies
2.4k
views
Error: 'exprs<-' is not an exported object from 'namespace:affy'
affy
limma
piano
updated 4.6 years ago by
James W. MacDonald
65k • written 4.6 years ago by
abolfazl.nikakhtar
• 0
0
votes
5
replies
2.3k
views
loadGSC() Piano package
piano
updated 9.1 years ago by
Leif Väremo
▴ 70 • written 9.1 years ago by
nonCodingGene
▴ 10
0
votes
3
replies
1.7k
views
piano runGSA with input from DESEQ2
deseq2
gene ontology
piano
7.5 years ago
simonp.snoeck
• 0
0
votes
9
replies
1.7k
views
unable to load rsbml for piano reporter metabolite analysis
rsbml
piano
libsbml
gene set enrichment analysis
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
jan.strauss
• 0
3
votes
3
replies
1.6k
views
Error while running piano's runGSA
piano
runGSA
updated 7.9 years ago by
Leif Väremo
▴ 70 • written 7.9 years ago by
rubi
▴ 110
2
votes
4
replies
1.3k
views
Running time of piano's runGSA
piano
runGSA
runtime
updated 7.3 years ago by
Leif Väremo
▴ 70 • written 7.3 years ago by
rubi
▴ 110
2
votes
2
replies
1.2k
views
Using GeneSetCollection objects of GSEABase in piano package
piano
gseabase
7.2 years ago
Lluís Revilla Sancho
▴ 730
0
votes
1
reply
1.1k
views
Mixing list from Piano package output
Piano
List
updated 9.0 years ago by
Leif Väremo
▴ 70 • written 9.0 years ago by
nonCodingGene
▴ 10
3
votes
2
replies
1.1k
views
How is microarray normalization done in PIANO?
piano
microarray
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
rf
• 0
10 results • Page
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Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none
by
WardDeb
• 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Votes
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
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