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W: unnormalised vs normalised distribution
Cancer
gcrma
PICS
Cancer
gcrma
PICS
17.9 years ago
Benjamin Otto
▴ 830
0
votes
0
replies
913
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Hey sexy still here?
PICS
PICS
15.9 years ago
Karly Faith
▴ 10
0
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0
replies
849
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PICS mm9 mappability map?
Cancer
PICS
Cancer
PICS
13.6 years ago
Hamid Bolouri
▴ 90
0
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2
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1.1k
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PICS: vignette code outdated (use of GenomeData-object)
convert
PICS
convert
PICS
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Samuel Wuest
▴ 330
0
votes
1
reply
1.2k
views
help needed in namespace definition
GenomicRanges
PICS
GenomicRanges
PICS
updated 12.7 years ago by
Hervé Pagès
16k • written 12.7 years ago by
Frederic Fournier
▴ 10
0
votes
5
replies
1.1k
views
PICS
GO
PICS
GO
PICS
updated 12.5 years ago by
Arnaud Droit
▴ 20 • written 12.5 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
975
views
Regarding MotIv and PICS package install
PICS
PICS
updated 12.0 years ago by
Dan Tenenbaum
★ 8.2k • written 12.0 years ago by
Swaroopa Muppiri
▴ 20
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
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biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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