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Re: funnction in LIMMA
limma
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limma
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20.8 years ago
Gordon Smyth
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA
Biophysics
Homo sapiens
biomaRt
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miRNA
Biophysics
Homo sapiens
biomaRt
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updated 14.8 years ago by
michael watson IAH-C
★ 3.4k • written 14.8 years ago by
mauede@alice.it
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question on makeTranscriptDbFromUCSC
Cancer
rtracklayer
GenomicRanges
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SANTA
Cancer
rtracklayer
GenomicRanges
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SANTA
updated 13.8 years ago by
Ping Ma
▴ 10 • written 13.8 years ago by
Hervé Pagès
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2
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DNS problem with bioconductor.org
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Cancer
PING
updated 12.5 years ago by
David Henderson
▴ 20 • written 12.5 years ago by
Philip Lijnzaad
▴ 160
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1
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751
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[Bioc-devel] DNS problem with bioconductor.org
Cancer
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Cancer
PING
updated 12.5 years ago by
Dan Tenenbaum
★ 8.2k • written 12.5 years ago by
Philip Lijnzaad
▴ 160
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7
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1.7k
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Excessive memory requirements of PING or bug?
PING
PING
updated 11.9 years ago by
Xuekui Zhang
▴ 20 • written 11.9 years ago by
Lars Hennig
▴ 10
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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