Biostar Ping

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limma PING limma PING

19.0 years ago Gordon Smyth 45k

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miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING

updated 12.9 years ago by michael watson IAH-C ★ 3.4k • written 12.9 years ago by mauede@alice.it ▴ 870

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Cancer rtracklayer GenomicRanges PING SANTA Cancer rtracklayer GenomicRanges PING SANTA

updated 11.9 years ago by Ping Ma ▴ 10 • written 11.9 years ago by Hervé Pagès 15k

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Cancer PING Cancer PING

updated 10.7 years ago by David Henderson ▴ 20 • written 10.7 years ago by Philip Lijnzaad ▴ 160

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Cancer PING Cancer PING

updated 10.7 years ago by Dan Tenenbaum ★ 8.2k • written 10.7 years ago by Philip Lijnzaad ▴ 160

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PING PING

updated 10.0 years ago by Xuekui Zhang ▴ 20 • written 10.0 years ago by Lars Hennig ▴ 10

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Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Gordon Smyth 45k

When I answered your original question, I assumed you would use the simplest possible code ``` Status <- factor(Sample_info$Status) ``` w…

Comment: Confused about the design matrix in edgeR: How to tell R to consider one level a by Mohamed • 0

Thanks a lot, will try this and see.

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a by Steve Lianoglou 13k

> My question is why the design matrix named its last column ' StatusControl' and not 'statustreated' ? It's because the Intercept is th…

Comment: Italicise by Kevin Blighe 3.5k

Hi, can you compare the contents of your variable, `lab_italics` , versus those of the variable (`selectLab_italics`) that is produced in m…

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Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Answer: paired analysis : return data matrix with indvidual/subject effects eliminated.

DESeq2: likelihood ratio test interpretation, multifactor

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Teacher to Michael Love 37k