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plgem
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calculating PLGEM p-values...
PLGEM
8.9 years ago
pstopka
• 0
0
votes
0
replies
1.2k
views
PLGEM on metabolomic data?
miRNA
Metabolomics
Proteomics
Normalization
plgem
miRNA
Metabolomics
Proteomics
plgem
11.5 years ago
Norman Pavelka
▴ 140
0
votes
4
replies
1.1k
views
Fwd: FW: plgem
plgem
plgem
updated 11.9 years ago by
Olli Kannaste
▴ 20 • written 11.9 years ago by
Norman Pavelka
▴ 140
0
votes
1
reply
1.0k
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Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
892
views
Fwd: Help on PLGEM R Package Data Import
Biobase
plgem
Biobase
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
856
views
Fwd: plgem for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.0k
views
plgem for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.2k
views
limma for spectral counts
limma
plgem
limma
plgem
12.6 years ago
Amin Moghaddasi
▴ 130
0
votes
5
replies
2.1k
views
Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray
Proteomics
limma
plgem
Microarray
Proteomics
limma
plgem
updated 13.5 years ago by
Yolande Tra
▴ 120 • written 13.5 years ago by
Pavelka, Norman
▴ 70
0
votes
0
replies
982
views
replicable of *PLGEM*
plgem
cycle
plgem
cycle
13.5 years ago
Pavelka, Norman
▴ 70
0
votes
0
replies
801
views
'plgem' package bug fix
plgem
plgem
13.7 years ago
Pavelka, Norman
▴ 70
11 results • Page
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Recent ...
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Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR
by
Gordon Smyth
50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Answer: Log-cpm values from limma
by
Gordon Smyth
50k
The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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