Showing : plgem • reset
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calculating PLGEM p-values...
PLGEM
8.9 years ago pstopka • 0
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PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
11.6 years ago Norman Pavelka ▴ 140
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Fwd: FW: plgem
plgem plgem
updated 11.9 years ago by ▴ 20 • written 11.9 years ago by ▴ 140
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Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.6 years ago Norman Pavelka ▴ 140
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Fwd: Help on PLGEM R Package Data Import
Biobase plgem Biobase plgem
12.6 years ago Norman Pavelka ▴ 140
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Fwd: plgem for spectral counts
limma plgem limma plgem
12.6 years ago Norman Pavelka ▴ 140
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plgem for spectral counts
limma plgem limma plgem
12.6 years ago Norman Pavelka ▴ 140
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limma for spectral counts
limma plgem limma plgem
12.6 years ago Amin Moghaddasi ▴ 130
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Package plgem for analysis of spectral counts, was 'limma for spectral counts'
Microarray Proteomics limma plgem Microarray Proteomics limma plgem
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ▴ 70
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replicable of *PLGEM*
plgem cycle plgem cycle
13.5 years ago Pavelka, Norman ▴ 70
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'plgem' package bug fix
plgem plgem
13.7 years ago Pavelka, Norman ▴ 70
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k
I don't really have any additional suggestion here.
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none by Michael Love 41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
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DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
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