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Votes
Showing :
plier
•
reset
0
votes
0
replies
951
views
Affymetrix gene st array - ok to do statistics on Category:Main only?
limma
plier
oligo
limma
plier
oligo
11.6 years ago
Martin O'Hare
▴ 10
0
votes
0
replies
1.0k
views
FARMS package (fwd)
Microarray
Normalization
cdf
plier
farms
Microarray
Normalization
cdf
plier
farms
11.7 years ago
Günter Klambauer
▴ 540
0
votes
0
replies
736
views
plier package
Normalization
cdf
plier
Normalization
cdf
plier
11.7 years ago
fire1976 wyoming
▴ 380
0
votes
0
replies
773
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf
affy
plier
xps
cdf
affy
plier
xps
11.8 years ago
cstrato
★ 3.9k
0
votes
1
reply
1.1k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO
vsn
plier
GO
vsn
plier
updated 13.9 years ago by
Mike Walter
▴ 230 • written 14.0 years ago by
Benjamin Otto
▴ 830
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.3 years ago by
dorothyc
▴ 140 • written 15.3 years ago by
James W. MacDonald
65k
0
votes
2
replies
1.0k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf
plier
cdf
plier
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.1k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization
vsn
plier
Normalization
vsn
plier
updated 15.8 years ago by
Naomi Altman
★ 6.0k • written 15.8 years ago by
Nick Henriquez
▴ 20
0
votes
3
replies
939
views
Standard error in summarization ExpressionSets
plier
plier
updated 15.8 years ago by
James W. MacDonald
65k • written 15.8 years ago by
Rodrigo Santamaría Vicente
▴ 10
0
votes
0
replies
830
views
plier using reference set normalization
Normalization
plier
RefPlus
Normalization
plier
RefPlus
16.1 years ago
Roumyana Yordanova
▴ 110
0
votes
3
replies
1.2k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier
plier
updated 16.1 years ago by
Henrik Bengtsson
★ 2.4k • written 16.1 years ago by
Fang, Hong*
▴ 30
0
votes
0
replies
927
views
problem with function to interrogate x:Map (exonmap)
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
16.6 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival
cdf
genefilter
affy
simpleaffy
plier
exonmap
Survival
cdf
genefilter
affy
updated 16.6 years ago by
James W. MacDonald
65k • written 16.6 years ago by
bruce
▴ 20
0
votes
1
reply
1.1k
views
Exonmap mapping problems
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
updated 16.6 years ago by
Michal Okoniewski
▴ 120 • written 16.6 years ago by
Tore Eriksson
▴ 10
0
votes
0
replies
755
views
justPlier() on UNIX
plier
plier
16.8 years ago
Pickard, Mike
▴ 10
0
votes
6
replies
1.4k
views
Affy EXON Array: iterPLIER or RMA
Cancer
plier
Cancer
plier
updated 16.9 years ago by
James W. MacDonald
65k • written 16.9 years ago by
Daniel Brewer
★ 1.9k
0
votes
1
reply
1.2k
views
annaffy errors
GO
Survival
mgu74av2
cdf
annotate
affy
limma
gcrma
matchprobes
annaffy
simpleaffy
plier
updated 17.2 years ago by
James W. MacDonald
65k • written 17.2 years ago by
Ido M. Tamir
▴ 320
0
votes
0
replies
808
views
questions on BioC's implementation of plier
Normalization
plier
Normalization
plier
17.2 years ago
Jenny Drnevich
★ 2.2k
0
votes
2
replies
1.4k
views
results of justPlier vs. RMA
Clustering
affy
plier
affyio
Clustering
affy
plier
affyio
updated 17.4 years ago by
Michal Okoniewski
▴ 120 • written 17.4 years ago by
He, Yiwen NIH/CIT
▴ 360
0
votes
1
reply
842
views
Mismatch probe handling for exon arrays
Cancer
Breast
probe
affy
plier
Cancer
Breast
probe
affy
plier
updated 17.5 years ago by
James W. MacDonald
65k • written 17.5 years ago by
Steven McKinney
▴ 310
0
votes
2
replies
1.0k
views
plier error
plier
plier
updated 17.6 years ago by
Crispin Miller
★ 1.1k • written 17.6 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
691
views
help with justPlier
plier
plier
17.6 years ago
He, Yiwen NIH/CIT
▴ 360
0
votes
8
replies
1.8k
views
error message in gcrma
cdf
affy
gcrma
matchprobes
plier
cdf
affy
gcrma
matchprobes
plier
updated 17.8 years ago by
Seth Falcon
★ 7.4k • written 17.8 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
2
replies
756
views
Affymetrix question
plier
plier
updated 18.4 years ago by
James W. MacDonald
65k • written 18.4 years ago by
lucia ¿?
▴ 50
0
votes
5
replies
1.4k
views
PLIER affinities redux
cdf
probe
Biobase
affy
plier
cdf
probe
Biobase
affy
plier
updated 18.5 years ago by
Crispin Miller
★ 1.1k • written 18.5 years ago by
Jeremy Gollub
▴ 60
0
votes
0
replies
845
views
PLIER affinities redux
ath1121501
cdf
probe
Biobase
affy
plier
ath1121501
cdf
probe
Biobase
affy
plier
18.5 years ago
Matthew Hannah
▴ 940
0
votes
1
reply
871
views
PLIER affinities
rae230a
cdf
probe
reposTools
affy
plier
rae230a
cdf
probe
reposTools
affy
plier
updated 18.5 years ago by
James W. MacDonald
65k • written 18.5 years ago by
Jeremy Gollub
▴ 80
0
votes
1
reply
742
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn
gcrma
matchprobes
plier
vsn
gcrma
matchprobes
plier
updated 18.6 years ago by
James W. MacDonald
65k • written 18.6 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
1.3k
views
NA values
Normalization
Cancer
limma
gcrma
affyPLM
limmaGUI
plier
Normalization
Cancer
limma
gcrma
18.7 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
2
replies
939
views
PLIER: two questions
plier
plier
updated 18.7 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 18.7 years ago by
Ariel Chernomoretz
▴ 380
0
votes
3
replies
1.0k
views
Anyone get plier to install on OS X?
plier
plier
18.8 years ago
Ken Termiso
▴ 250
0
votes
1
reply
732
views
PLIER -- low values?
Microarray
plier
Microarray
plier
updated 18.8 years ago by
James W. MacDonald
65k • written 18.8 years ago by
Tarun Nayar
▴ 190
0
votes
1
reply
849
views
plier crashes with 51 CEL files
gcrma
PROcess
plier
gcrma
PROcess
plier
19.0 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
0
replies
623
views
Re:PLIER wierd Mvs A
plier
plier
19.1 years ago
Anthony Bosco
▴ 20
0
votes
1
reply
1.0k
views
PLIER Error
plier
plier
updated 19.1 years ago by
Crispin Miller
★ 1.1k • written 19.1 years ago by
Anthony Bosco
▴ 500
0
votes
0
replies
799
views
PLIER
plier
plier
19.1 years ago
Crispin Miller
★ 1.1k
0
votes
0
replies
783
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization
probe
affycomp
plier
Normalization
probe
affycomp
plier
19.1 years ago
Ariel Chernomoretz
▴ 380
0
votes
2
replies
883
views
Affy PLIER
plier
plier
updated 19.5 years ago by
Rafael A. Irizarry
★ 2.3k • written 19.5 years ago by
Dick Beyer
★ 1.4k
0
votes
1
reply
1.0k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.5 years ago by
Francois Collin
▴ 50 • written 19.5 years ago by
Lelivelt, Mike
▴ 50
0
votes
3
replies
2.6k
views
what normalization method does mas5 use
Normalization
GO
affy
gcrma
plier
Normalization
GO
affy
gcrma
plier
updated 19.7 years ago by
F Duan
▴ 100 • written 19.7 years ago by
Brian Bennett
▴ 10
0
votes
0
replies
913
views
Question regarding bg correction/normalization/summarization
Normalization
Cancer
probe
affy
vsn
plier
Normalization
Cancer
probe
affy
vsn
plier
19.7 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
957
views
Running justRMA on .CEL files in another directory
plier
plier
updated 19.8 years ago by
donghu@itsa.ucsf.edu
▴ 70 • written 19.8 years ago by
PARK,CHRISTOPHER CHANGSUN
▴ 50
0
votes
0
replies
1.1k
views
median polish vs mas/PLIER info
Microarray
Normalization
Cancer
probe
affy
GeneSpring
PROcess
plier
Microarray
Cancer
19.9 years ago
Anthony Bosco
▴ 500
0
votes
1
reply
889
views
AFFY PLIER ALGORITHM
plier
plier
20.0 years ago
Anthony Bosco
▴ 500
44 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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