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Showing :
plier
•
reset
0
votes
0
replies
936
views
Question regarding bg correction/normalization/summarization
Normalization
Cancer
probe
affy
vsn
plier
Normalization
Cancer
probe
affy
vsn
plier
19.8 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
856
views
PLIER affinities redux
ath1121501
cdf
probe
Biobase
affy
plier
ath1121501
cdf
probe
Biobase
affy
plier
18.5 years ago
Matthew Hannah
▴ 940
0
votes
1
reply
1.1k
views
Normalization Recommendations- severe biological variation (from the digest)
Normalization
vsn
plier
Normalization
vsn
plier
updated 15.8 years ago by
Naomi Altman
★ 6.0k • written 15.8 years ago by
Nick Henriquez
▴ 20
0
votes
1
reply
909
views
AFFY PLIER ALGORITHM
plier
plier
20.1 years ago • updated 20.0 years ago
Anthony Bosco
▴ 500
0
votes
2
replies
976
views
Running justRMA on .CEL files in another directory
plier
plier
updated 19.9 years ago by
donghu@itsa.ucsf.edu
▴ 70 • written 19.9 years ago by
PARK,CHRISTOPHER CHANGSUN
▴ 50
0
votes
0
replies
1.1k
views
median polish vs mas/PLIER info
Microarray
Normalization
Cancer
probe
affy
GeneSpring
PROcess
plier
Microarray
Cancer
20.0 years ago
Anthony Bosco
▴ 500
0
votes
3
replies
2.6k
views
what normalization method does mas5 use
Normalization
GO
affy
gcrma
plier
Normalization
GO
affy
gcrma
plier
updated 19.8 years ago by
F Duan
▴ 100 • written 19.8 years ago by
Brian Bennett
▴ 10
0
votes
1
reply
1.1k
views
PLIER is available as open source
plier
SANTA
plier
SANTA
updated 19.6 years ago by
Francois Collin
▴ 50 • written 19.6 years ago by
Lelivelt, Mike
▴ 50
0
votes
2
replies
901
views
Affy PLIER
plier
plier
updated 19.5 years ago by
Rafael A. Irizarry
★ 2.3k • written 19.5 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
796
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization
probe
affycomp
plier
Normalization
probe
affycomp
plier
19.2 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
810
views
PLIER
plier
plier
19.2 years ago
Crispin Miller
★ 1.1k
0
votes
1
reply
1.0k
views
PLIER Error
plier
plier
updated 19.2 years ago by
Crispin Miller
★ 1.1k • written 19.2 years ago by
Anthony Bosco
▴ 500
0
votes
0
replies
639
views
Re:PLIER wierd Mvs A
plier
plier
19.2 years ago
Anthony Bosco
▴ 20
0
votes
1
reply
863
views
plier crashes with 51 CEL files
gcrma
PROcess
plier
gcrma
PROcess
plier
19.1 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
1
reply
744
views
PLIER -- low values?
Microarray
plier
Microarray
plier
updated 18.9 years ago by
James W. MacDonald
65k • written 18.9 years ago by
Tarun Nayar
▴ 190
0
votes
3
replies
1.1k
views
Anyone get plier to install on OS X?
plier
plier
18.9 years ago
Ken Termiso
▴ 250
0
votes
2
replies
961
views
PLIER: two questions
plier
plier
updated 18.8 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 18.8 years ago by
Ariel Chernomoretz
▴ 380
0
votes
0
replies
1.3k
views
NA values
Normalization
Cancer
limma
gcrma
affyPLM
limmaGUI
plier
Normalization
Cancer
limma
gcrma
18.8 years ago
Brooke-Powell, Elizabeth
▴ 170
0
votes
1
reply
751
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn
gcrma
matchprobes
plier
vsn
gcrma
matchprobes
plier
updated 18.7 years ago by
James W. MacDonald
65k • written 18.7 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
1
reply
878
views
PLIER affinities
rae230a
cdf
probe
reposTools
affy
plier
rae230a
cdf
probe
reposTools
affy
plier
updated 18.5 years ago by
James W. MacDonald
65k • written 18.5 years ago by
Jeremy Gollub
▴ 80
0
votes
5
replies
1.5k
views
PLIER affinities redux
cdf
probe
Biobase
affy
plier
cdf
probe
Biobase
affy
plier
updated 18.5 years ago by
Crispin Miller
★ 1.1k • written 18.5 years ago by
Jeremy Gollub
▴ 60
0
votes
2
replies
767
views
Affymetrix question
plier
plier
updated 18.5 years ago by
James W. MacDonald
65k • written 18.5 years ago by
lucia ¿?
▴ 50
0
votes
8
replies
1.8k
views
error message in gcrma
cdf
affy
gcrma
matchprobes
plier
cdf
affy
gcrma
matchprobes
plier
updated 17.9 years ago by
Seth Falcon
★ 7.4k • written 17.9 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
706
views
help with justPlier
plier
plier
17.7 years ago
He, Yiwen NIH/CIT
▴ 360
0
votes
2
replies
1.1k
views
plier error
plier
plier
updated 17.7 years ago by
Crispin Miller
★ 1.1k • written 17.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
1
reply
862
views
Mismatch probe handling for exon arrays
Cancer
Breast
probe
affy
plier
Cancer
Breast
probe
affy
plier
updated 17.5 years ago by
James W. MacDonald
65k • written 17.5 years ago by
Steven McKinney
▴ 310
0
votes
2
replies
1.5k
views
results of justPlier vs. RMA
Clustering
affy
plier
affyio
Clustering
affy
plier
affyio
updated 17.5 years ago by
Michal Okoniewski
▴ 120 • written 17.5 years ago by
He, Yiwen NIH/CIT
▴ 360
0
votes
0
replies
819
views
questions on BioC's implementation of plier
Normalization
plier
Normalization
plier
17.3 years ago
Jenny Drnevich
★ 2.2k
0
votes
1
reply
1.2k
views
annaffy errors
GO
Survival
mgu74av2
cdf
annotate
affy
limma
gcrma
matchprobes
annaffy
simpleaffy
plier
updated 17.2 years ago by
James W. MacDonald
65k • written 17.2 years ago by
Ido M. Tamir
▴ 320
0
votes
6
replies
1.4k
views
Affy EXON Array: iterPLIER or RMA
Cancer
plier
Cancer
plier
updated 17.0 years ago by
James W. MacDonald
65k • written 17.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
762
views
justPlier() on UNIX
plier
plier
16.9 years ago
Pickard, Mike
▴ 10
0
votes
1
reply
1.1k
views
Exonmap mapping problems
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
updated 16.7 years ago by
Michal Okoniewski
▴ 120 • written 16.7 years ago by
Tore Eriksson
▴ 10
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival
cdf
genefilter
affy
simpleaffy
plier
exonmap
Survival
cdf
genefilter
affy
updated 16.7 years ago by
James W. MacDonald
65k • written 16.7 years ago by
bruce
▴ 20
0
votes
0
replies
944
views
problem with function to interrogate x:Map (exonmap)
Survival
genefilter
affy
plier
affyio
exonmap
Survival
genefilter
affy
plier
affyio
16.6 years ago
Wolfgang Raffelsberger
▴ 160
0
votes
3
replies
1.2k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene
plier
plier
updated 16.2 years ago by
Henrik Bengtsson
★ 2.4k • written 16.2 years ago by
Fang, Hong*
▴ 30
0
votes
0
replies
844
views
plier using reference set normalization
Normalization
plier
RefPlus
Normalization
plier
RefPlus
16.2 years ago
Roumyana Yordanova
▴ 110
0
votes
3
replies
955
views
Standard error in summarization ExpressionSets
plier
plier
updated 15.9 years ago by
James W. MacDonald
65k • written 15.9 years ago by
Rodrigo Santamaría Vicente
▴ 10
0
votes
2
replies
1.0k
views
Prokaryotic_Rhodobacter capsulatus GEP
cdf
plier
cdf
plier
updated 15.4 years ago by
Martin Morgan
25k • written 15.4 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics
cdf
affy
makecdfenv
plier
affxparser
preprocessCore
Epigenetics
cdf
affy
updated 15.4 years ago by
dorothyc
▴ 140 • written 15.4 years ago by
James W. MacDonald
65k
0
votes
1
reply
1.1k
views
No changes between Groups using GeneST Arrays from Affymetrix
GO
vsn
plier
GO
vsn
plier
updated 14.0 years ago by
Mike Walter
▴ 230 • written 14.0 years ago by
Benjamin Otto
▴ 830
0
votes
0
replies
779
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf
affy
plier
xps
cdf
affy
plier
xps
11.9 years ago
cstrato
★ 3.9k
0
votes
0
replies
756
views
plier package
Normalization
cdf
plier
Normalization
cdf
plier
11.8 years ago
fire1976 wyoming
▴ 380
0
votes
0
replies
1.0k
views
FARMS package (fwd)
Microarray
Normalization
cdf
plier
farms
Microarray
Normalization
cdf
plier
farms
11.7 years ago
Günter Klambauer
▴ 540
0
votes
0
replies
958
views
Affymetrix gene st array - ok to do statistics on Category:Main only?
limma
plier
oligo
limma
plier
oligo
11.7 years ago
Martin O'Hare
▴ 10
44 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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