Biostar Plot.MA

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limma plot.MA volcanoplot oligo

updated 6.5 years ago by Gordon Smyth 44k • written 6.5 years ago by Gabriel Nathan Kaufman, Mr ▴ 60

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Comment: Cannot install Phyloseq and dada2 by ymtan • 0

Hello Guido, Thanks for replying. I did read about insufficient rights when it comes to installing packages and how that can mess things u…

Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k

Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…

Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20

Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…

Answer: submitting a BSgenome package by deisianyufg • 0

From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…

Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970

Is the one plot a mirror image of the other?

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Comment: submitting a BSgenome package

Answer: rlog vs vst for outlier identification

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