Showing : plot • reset
11
votes
15
replies
1.6k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
4.4 years ago baus87 • 0
0
votes
3
replies
440
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 2.0 years ago by ★ 4.3k • written 2.2 years ago by ▴ 10
2
votes
2
replies
601
views
Change legend names when using plotBCV
edger plot Tutorial
updated 3.4 years ago by 44k • written 3.4 years ago by • 0
0
votes
6
replies
893
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 4.7 years ago by • 0 • written 5.0 years ago by • 0
2
votes
3
replies
1.1k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
5.4 years ago oswaldo.lorenzo ▴ 10
0
votes
2
replies
3.0k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
6.8 years ago greg.mulhearn • 0
1
vote
1
reply
965
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 6.0 years ago by 58k • written 6.0 years ago by ▴ 50
2
votes
2
replies
826
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 10
4
votes
1
reply
1.4k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 5.5 years ago by ★ 1.6k • written 5.5 years ago by ▴ 10
1
vote
1
reply
1.0k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
5.4 years ago oswaldo.lorenzo ▴ 10
0
votes
2
replies
199
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
5 months ago karlaarz • 0
0
votes
4
replies
2.0k
views
heatmap.2 like plot in ggplot
plot
updated 7.2 years ago by 58k • written 7.2 years ago by ▴ 120
0
votes
1
reply
746
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 7.0 years ago by 44k • written 7.0 years ago by ▴ 100
0
votes
1
reply
3.8k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 7.0 years ago by 58k • written 7.0 years ago by ▴ 10
2
votes
2
replies
1.2k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 6.5 years ago by 58k • written 6.5 years ago by ▴ 40
1
vote
2
replies
1.1k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 6.5 years ago by ★ 1.6k • written 6.5 years ago by ▴ 40
0
votes
1
reply
569
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 3.1 years ago by ▴ 150 • written 3.2 years ago by • 0
0
votes
1
reply
417
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
0
votes
5
replies
609
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
2
replies
349
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
1
reply
314
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
1
reply
336
views
How to create a violin plot
plot ggcyte
updated 2.3 years ago by 3.4k • written 2.3 years ago by • 0
1
vote
2
replies
489
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 2.3 years ago by ▴ 300 • written 2.3 years ago by • 0
0
votes
9
replies
312
views
Plotting change over time
deseq2 Plot
updated 22 months ago by 35k • written 22 months ago by • 0
1
vote
2
replies
662
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 16 months ago by ▴ 10 • written 16 months ago by • 0
2
votes
2
replies
297
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 15 months ago by ★ 4.3k • written 15 months ago by • 0
1
vote
3
replies
474
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 13 months ago by ▴ 120 • written 15 months ago by • 0
0
votes
2
replies
571
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 11 months ago by ▴ 970 • written 11 months ago by • 0
0
votes
1
reply
851
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
6.5 years ago bruce.moran ▴ 30
2
votes
4
replies
751
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 10
1
vote
3
replies
1.7k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 10
1
vote
2
replies
1.3k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 4.9 years ago by ▴ 90 • written 4.9 years ago by ▴ 10
0
votes
1
reply
791
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 4.6 years ago by 13k • written 4.6 years ago by • 0
2
votes
1
reply
521
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 4.5 years ago by ★ 2.0k • written 4.5 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Plotting coverage from bam files
bam plot
updated 3.7 years ago by 58k • written 3.7 years ago by ▴ 40
2
votes
5
replies
956
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 3.6 years ago by 35k • written 3.6 years ago by ▴ 10
0
votes
1
reply
1.9k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 3.3 years ago by ▴ 390 • written 3.3 years ago by • 0
0
votes
1
reply
769
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
5.2 years ago • updated 4.7 years ago juan-pablo.cerapio-arroyo ▴ 10
0
votes
0
replies
134
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
3 months ago Abdou-samad • 0
0
votes
2
replies
303
views
Correlation plot how to improve?
plot correlation
2.3 years ago annkolman78 • 0
0
votes
0
replies
551
views
Plotting False discoveries vs genes selected
plot
5.5 years ago humberto_munoz • 0
0
votes
5
replies
1.2k
views
R plot error
r bioconductor graph plot data representation in graphical forms
6.6 years ago megha.24may • 0
0
votes
0
replies
199
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
22 months ago raquelponti • 0
0
votes
1
reply
281
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 14 months ago by 2.9k • written 14 months ago by • 0
0
votes
0
replies
650
views
changing the plot type in minet package
minet plot
5.8 years ago Angel ▴ 40
0
votes
0
replies
606
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
4.4 years ago anupriyaverma1408 • 0
0
votes
3
replies
680
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
4.2 years ago fawazfebin ▴ 30
0
votes
1
reply
238
views
two tracks have the same axis
plot Gviz
14 months ago 腾 • 0
0
votes
0
replies
183
views
Gviz: set colors for UTRs
plot color Gviz utr
9 months ago ginlucks • 0
0
votes
0
replies
701
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
6.4 years ago koenhendriks89 • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Gviz and datatracks by Malcolm Cook ★ 1.5k
what is the value of bgFile? It probably does not have an extension the DataTrack recognizes....
Answer: Large DE LogFC range by Michael Love 35k
Agree with ATpoint, look at the genes with large LFC (from lfcShrink) using `plotCounts`. Usually large MLE LFC are from all 0's in one gro…
Comment: Large DE LogFC range by ATpoint ▴ 970
You could at least show some counts of the genes with large FCs. Also the PCA would help.
Comment: Weird output of DESeq2 when using single sample from one group agains the other by Michael Love 35k
See the 2014 paper, the MLE LFC is found via IRLS: "We use the standard iteratively reweighted least-squares algorithm [12] for each gene’…
Comment: Weird output of DESeq2 when using single sample from one group agains the other by FantasticAI • 0
Thank you for the help. Sorry for keep asking silly questions: I wonder given 2 groups (A and B), and each group has 6 samples, how does th…
Votes
Where can I find EnsDb.Hsapiens.v105?
Two-way interaction, linear redundancy
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Joint disperstion estimation for DEXSeq and DESeq2
Awards • All
Popular Question to Malcolm Cook ★ 1.5k
Popular Question to svlachavas ▴ 780
Scholar to Michael Love 35k
Popular Question to Gordon Smyth 44k
Popular Question to floriandeckert ▴ 30
Locations • All
United States, 16 minutes ago
Italy, 20 minutes ago
Australia, 34 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Pakistan, 1 hour ago
Traffic: 238 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6