Showing : plot • reset
0
votes
3
replies
789
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 3.0 years ago by ★ 4.6k • written 3.2 years ago by ▴ 10
11
votes
15
replies
1.9k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
5.4 years ago baus87 • 0
2
votes
3
replies
1.2k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
6.4 years ago oswaldo.lorenzo ▴ 10
0
votes
2
replies
3.9k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
7.8 years ago greg.mulhearn • 0
0
votes
6
replies
1.1k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 5.7 years ago by • 0 • written 6.0 years ago by ▴ 10
2
votes
2
replies
815
views
Change legend names when using plotBCV
edger plot Tutorial
updated 4.5 years ago by 47k • written 4.5 years ago by • 0
0
votes
2
replies
1.3k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 10 months ago by • 0 • written 10 months ago by • 0
2
votes
2
replies
952
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 6.6 years ago by ▴ 130 • written 6.6 years ago by ▴ 10
4
votes
1
reply
1.6k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 6.5 years ago by ★ 1.6k • written 6.5 years ago by ▴ 10
1
vote
1
reply
1.2k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
6.4 years ago oswaldo.lorenzo ▴ 10
2
votes
4
replies
898
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 6.1 years ago by 11k • written 6.1 years ago by ▴ 10
1
vote
3
replies
2.1k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 6.0 years ago by 11k • written 6.0 years ago by ▴ 10
0
votes
4
replies
487
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 6 days ago by 62k • written 18 months ago by • 0
0
votes
4
replies
2.2k
views
heatmap.2 like plot in ggplot
plot
updated 8.2 years ago by 62k • written 8.2 years ago by ▴ 120
0
votes
1
reply
900
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 8.0 years ago by 47k • written 8.0 years ago by ▴ 100
0
votes
1
reply
4.0k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 8.0 years ago by 62k • written 8.0 years ago by ▴ 10
2
votes
2
replies
1.4k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 7.5 years ago by 62k • written 7.5 years ago by ▴ 40
1
vote
2
replies
1.2k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 7.5 years ago by ★ 1.6k • written 7.5 years ago by ▴ 40
1
vote
1
reply
1.1k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 7.0 years ago by 62k • written 7.0 years ago by ▴ 50
2
votes
5
replies
1.2k
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 4.6 years ago by 39k • written 4.6 years ago by ▴ 10
0
votes
1
reply
2.3k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 4.3 years ago by ▴ 400 • written 4.3 years ago by • 0
0
votes
1
reply
821
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 4.1 years ago by ▴ 150 • written 4.2 years ago by • 0
0
votes
1
reply
534
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 4.1 years ago by 62k • written 4.1 years ago by ▴ 10
0
votes
5
replies
1.1k
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 3.4 years ago by ★ 4.6k • written 3.4 years ago by • 0
0
votes
2
replies
496
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 3.4 years ago by ★ 4.6k • written 3.4 years ago by • 0
0
votes
1
reply
452
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 3.4 years ago by ★ 4.6k • written 3.4 years ago by • 0
0
votes
1
reply
531
views
How to create a violin plot
plot ggcyte
updated 3.3 years ago by 3.7k • written 3.3 years ago by • 0
1
vote
2
replies
719
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 3.3 years ago by ▴ 320 • written 3.3 years ago by • 0
0
votes
9
replies
466
views
Plotting change over time
deseq2 Plot
updated 2.8 years ago by 39k • written 2.8 years ago by • 0
1
vote
2
replies
1.1k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 2.4 years ago by ▴ 40 • written 2.4 years ago by • 0
2
votes
2
replies
537
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 2.3 years ago by ★ 4.6k • written 2.3 years ago by • 0
1
vote
3
replies
867
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 2.1 years ago by ▴ 160 • written 2.3 years ago by • 0
0
votes
2
replies
2.2k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 23 months ago by ★ 2.1k • written 23 months ago by • 0
0
votes
1
reply
1.0k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
7.5 years ago bruce.moran ▴ 30
1
vote
2
replies
1.5k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 5.9 years ago by ▴ 90 • written 5.9 years ago by ▴ 10
0
votes
1
reply
1.0k
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 5.6 years ago by 13k • written 5.6 years ago by • 0
2
votes
1
reply
628
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 5.5 years ago by ★ 2.0k • written 5.5 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Plotting coverage from bam files
bam plot
updated 4.7 years ago by 62k • written 4.7 years ago by ▴ 40
0
votes
1
reply
900
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
6.2 years ago • updated 5.7 years ago juan-pablo.cerapio-arroyo ▴ 10
0
votes
1
reply
464
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 2.2 years ago by 3.4k • written 2.2 years ago by • 0
0
votes
1
reply
437
views
two tracks have the same axis
plot Gviz
2.2 years ago 腾 • 0
0
votes
0
replies
288
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 10 months ago by 39k • written 10 months ago by • 0
0
votes
0
replies
662
views
Plotting False discoveries vs genes selected
plot
6.5 years ago humberto_munoz • 0
0
votes
0
replies
695
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
5.4 years ago anupriyaverma1408 • 0
0
votes
3
replies
823
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
5.2 years ago fawazfebin ▴ 50
0
votes
2
replies
473
views
Correlation plot how to improve?
plot correlation
3.3 years ago annkolman78 • 0
0
votes
0
replies
801
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
7.4 years ago koenhendriks89 • 0
0
votes
0
replies
768
views
changing the plot type in minet package
minet plot
6.8 years ago Angel ▴ 40
0
votes
0
replies
339
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
2.8 years ago raquelponti • 0
0
votes
0
replies
355
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
15 months ago Abdou-samad • 0
50 results • Page 1 of 1
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Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…
Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
How many plants are used for each of the biological replicate samples? One plant or a few?
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…
Votes
DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
A: DESeq2 pairwise comparisons w/ 3 factors
Comment: MA plot
Comment: MA plot
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