Showing : plot • reset
0
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1
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3.8k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 7.0 years ago by 58k • written 7.0 years ago by ▴ 10
0
votes
2
replies
3.0k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
6.8 years ago greg.mulhearn • 0
0
votes
4
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2.0k
views
heatmap.2 like plot in ggplot
plot
updated 7.2 years ago by 58k • written 7.2 years ago by ▴ 120
0
votes
1
reply
1.9k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 3.3 years ago by ▴ 390 • written 3.3 years ago by • 0
1
vote
3
replies
1.7k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 10
11
votes
15
replies
1.6k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
4.4 years ago baus87 • 0
4
votes
1
reply
1.4k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 5.5 years ago by ★ 1.6k • written 5.5 years ago by ▴ 10
1
vote
2
replies
1.3k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 4.9 years ago by ▴ 90 • written 4.9 years ago by ▴ 10
0
votes
5
replies
1.2k
views
R plot error
r bioconductor graph plot data representation in graphical forms
6.6 years ago megha.24may • 0
2
votes
2
replies
1.2k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 6.5 years ago by 58k • written 6.5 years ago by ▴ 40
1
vote
2
replies
1.1k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 6.5 years ago by ★ 1.6k • written 6.5 years ago by ▴ 40
2
votes
3
replies
1.1k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
5.4 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
1.0k
views
Plotting coverage from bam files
bam plot
updated 3.7 years ago by 58k • written 3.7 years ago by ▴ 40
1
vote
1
reply
1.0k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
5.4 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
965
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 6.0 years ago by 58k • written 6.0 years ago by ▴ 50
2
votes
5
replies
956
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 3.6 years ago by 35k • written 3.6 years ago by ▴ 10
0
votes
6
replies
893
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 4.7 years ago by • 0 • written 5.0 years ago by • 0
0
votes
1
reply
851
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
6.5 years ago bruce.moran ▴ 30
2
votes
2
replies
826
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 5.6 years ago by ▴ 130 • written 5.6 years ago by ▴ 10
0
votes
1
reply
791
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 4.6 years ago by 13k • written 4.6 years ago by • 0
0
votes
1
reply
769
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
5.2 years ago • updated 4.7 years ago juan-pablo.cerapio-arroyo ▴ 10
2
votes
4
replies
751
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 10
0
votes
1
reply
746
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 7.0 years ago by 44k • written 7.0 years ago by ▴ 100
0
votes
0
replies
701
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
6.4 years ago koenhendriks89 • 0
0
votes
3
replies
680
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
4.2 years ago fawazfebin ▴ 30
1
vote
2
replies
662
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 16 months ago by ▴ 10 • written 16 months ago by • 0
0
votes
0
replies
650
views
changing the plot type in minet package
minet plot
5.8 years ago Angel ▴ 40
0
votes
5
replies
609
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
0
replies
606
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
4.4 years ago anupriyaverma1408 • 0
2
votes
2
replies
601
views
Change legend names when using plotBCV
edger plot Tutorial
updated 3.4 years ago by 44k • written 3.4 years ago by • 0
0
votes
2
replies
571
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 11 months ago by ▴ 970 • written 11 months ago by • 0
0
votes
1
reply
569
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 3.1 years ago by ▴ 150 • written 3.2 years ago by • 0
0
votes
0
replies
551
views
Plotting False discoveries vs genes selected
plot
5.5 years ago humberto_munoz • 0
2
votes
1
reply
521
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 4.5 years ago by ★ 2.0k • written 4.5 years ago by ▴ 60
1
vote
2
replies
489
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 2.3 years ago by ▴ 300 • written 2.3 years ago by • 0
1
vote
3
replies
474
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 13 months ago by ▴ 120 • written 15 months ago by • 0
0
votes
3
replies
440
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 2.0 years ago by ★ 4.3k • written 2.2 years ago by ▴ 10
0
votes
1
reply
417
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 3.1 years ago by 58k • written 3.1 years ago by • 0
0
votes
2
replies
349
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
1
reply
336
views
How to create a violin plot
plot ggcyte
updated 2.3 years ago by 3.4k • written 2.3 years ago by • 0
0
votes
1
reply
314
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 2.4 years ago by ★ 4.3k • written 2.4 years ago by • 0
0
votes
9
replies
312
views
Plotting change over time
deseq2 Plot
updated 22 months ago by 35k • written 22 months ago by • 0
0
votes
2
replies
303
views
Correlation plot how to improve?
plot correlation
2.3 years ago annkolman78 • 0
2
votes
2
replies
297
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 15 months ago by ★ 4.3k • written 15 months ago by • 0
0
votes
1
reply
281
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 14 months ago by 2.9k • written 14 months ago by • 0
0
votes
1
reply
238
views
two tracks have the same axis
plot Gviz
14 months ago 腾 • 0
0
votes
0
replies
199
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
22 months ago raquelponti • 0
0
votes
2
replies
199
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
5 months ago karlaarz • 0
0
votes
0
replies
183
views
Gviz: set colors for UTRs
plot color Gviz utr
9 months ago ginlucks • 0
0
votes
0
replies
134
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
3 months ago Abdou-samad • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Gviz and datatracks by Malcolm Cook ★ 1.5k
what is the value of bgFile? It probably does not have an extension the DataTrack recognizes....
Answer: Large DE LogFC range by Michael Love 35k
Agree with ATpoint, look at the genes with large LFC (from lfcShrink) using `plotCounts`. Usually large MLE LFC are from all 0's in one gro…
Comment: Large DE LogFC range by ATpoint ▴ 970
You could at least show some counts of the genes with large FCs. Also the PCA would help.
Comment: Weird output of DESeq2 when using single sample from one group agains the other by Michael Love 35k
See the 2014 paper, the MLE LFC is found via IRLS: "We use the standard iteratively reweighted least-squares algorithm [12] for each gene’…
Comment: Weird output of DESeq2 when using single sample from one group agains the other by FantasticAI • 0
Thank you for the help. Sorry for keep asking silly questions: I wonder given 2 groups (A and B), and each group has 6 samples, how does th…
Votes
Where can I find EnsDb.Hsapiens.v105?
Two-way interaction, linear redundancy
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data
Answer: Joint disperstion estimation for DEXSeq and DESeq2
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