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plotGrouper DESeq2 plot

updated 16 months ago by ATpoint ★ 1.3k • written 16 months ago by Sowbhagyalakshmi • 0

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Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules of subsetting in R apply. If the genes are rownames then do `res_aga[my_genes,]`, like you would subset any data.frame/matri…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Comment: package 'BiocInstaller' is not available (for R version 3.4.4) by James W. MacDonald 60k

I assume the politics have to do with the site-wide version of R? In over 20 years of using R, I have very rarely relied on an installation…

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