Showing : plotMA • reset
4
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3
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2.4k
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[DESeq2] normalization doesn't remove my mean-variance trend
normalization deseq2 plotMA meanSDplot
8.7 years ago aravenscraft • 0
1
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2
replies
951
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Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
0
votes
2
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4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2 rnaseq plotMA deseq rna-seq
updated 8.1 years ago by 41k • written 8.1 years ago by • 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma plotMA
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 50
1
vote
5
replies
603
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Mixed up sample info with plotPCA
plotMA ggplot2 plotPCA DESeq2
updated 6 months ago by 41k • written 6 months ago by • 0
1
vote
8
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2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2 plotma
6.6 years ago Yvan Wenger ▴ 50
1
vote
1
reply
611
views
plotMA difference using or not a sub matrix
matrixsubset DESeq2 plotMA
updated 3.0 years ago by 41k • written 3.0 years ago by ▴ 10
1
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1
reply
4.8k
views
MA plot in R
rstudio r plotMA
6.8 years ago g.k • 0
1
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3
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1.1k
views
plotMA (DESeq2) Issue
deseq2 plotMA rnaseq logfoldchange
updated 6.1 years ago by 41k • written 6.1 years ago by • 0
0
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1
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873
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What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2 plotMA rnaseq community analysis asymmetry
updated 4.1 years ago by 41k • written 4.2 years ago by • 0
10 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Scholar to Robert Castelo ★ 3.2k
Popular Question to James W. MacDonald 65k
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