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plotMA
•
reset
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.6 years ago
aravenscraft
• 0
3
votes
5
replies
3.6k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
Lisa Cohen
▴ 50
1
vote
1
reply
590
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
l.troxler
▴ 10
1
vote
5
replies
566
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 5 months ago by
Michael Love
41k • written 5 months ago by
sara.jacobson
• 0
1
vote
8
replies
2.5k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.5 years ago
Yvan Wenger
▴ 50
1
vote
1
reply
4.8k
views
MA plot in R
rstudio
r
plotMA
6.8 years ago
g.k
• 0
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
ap_vc21
• 0
1
vote
2
replies
932
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.8 years ago by
Gordon Smyth
50k • written 5.8 years ago by
CantExitVIM
▴ 10
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.0 years ago by
Michael Love
41k • written 8.0 years ago by
sjs0282
• 0
0
votes
1
reply
853
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.1 years ago by
Michael Love
41k • written 4.1 years ago by
chaco001
• 0
10 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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