Bioconductor PlotMDS

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limma edger plotmds tmm masigpro

6.3 years ago dacaba.92 ▴ 10

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1.7k

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plotMDS limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by liujy4 • 0

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1.5k

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edger plotmds

6.6 years ago fawazfebin ▴ 60

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719

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plotMDS Cell lines limma

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by Alexander Azarian ▴ 30

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3.7k

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edgeR plotmds differential gene expression MDS mdsplot

updated 5.3 years ago by Gordon Smyth 50k • written 5.3 years ago by ilovesuperheroes1993 • 0

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1.2k

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limma plotMDS

2.7 years ago jamie.gearing ▴ 60

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1.2k

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plotMDS PCA RNASeq MDS

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by Raito92 ▴ 60

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751

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plotMDS limma

8 months ago Cen • 0

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1.6k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.6 years ago by Jeff Leek ▴ 650 • written 7.6 years ago by svlachavas ▴ 830

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1.9k

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edger plotmds

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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910

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tree bootstrap dgelist plotmds

6.1 years ago Larry K. • 0

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1.1k

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rgl plot3d plotmds

8.0 years ago Adam • 0

12 results • Page 1 of 1

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Answer: List of Deprecated Packages for Bioc3.18 by shepherl 3.8k

previously unannounced, COHCAP is not deprecated but removed with release 3.19. see [mailing list discussion](https://stat.ethz.ch/piperm…

Answer: SNP locus package for mouse? by James W. MacDonald 65k

There isn't (IIRC) an official way to do this, but [Herve has a GitHub][1] with a package that you could use if you are willing to put in t…

Answer: flowStats Search Error by James W. MacDonald 65k

A better approach is to click on the Packages header on the main site, then search on that page for flowStats, rather than searching the en…

Comment: geneList error in clusterprofiler by Ana • 0

Ahh thank you, that fixed it!

Answer: geneList error in clusterprofiler by Basti ▴ 760

Have a look at the documentation : https://www.rdocumentation.org/packages/clusterProfiler/versions/3.0.4/topics/gseGO geneList argument s…

Votes

Answer: geneList error in clusterprofiler

Comment: Memory errors using read.bismark?

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

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