Bioconductor PlotTracks

Showing : plotTracks • reset

votes

replies

2.7k

views

Gviz-package biomart plottracks ucsctrack stickleback

updated 7.1 years ago by florian.hahne@novartis.com ★ 1.6k • written 7.1 years ago by br • 0

vote

replies

1.4k

views

gviz plottracks generegiontrack

5.3 years ago gpwhiz ▴ 10

votes

replies

1.3k

views

gviz granges plottracks

7.2 years ago Adam • 0

votes

replies

1.3k

views

gviz plottracks alignmentstrack

updated 7.2 years ago by hesham.gibriel • 0 • written 7.2 years ago by TimothéeFlutre ▴ 80

votes

replies

1.2k

views

gviz gviz-package datatrack plottracks

6.1 years ago stephen.williams ▴ 10

votes

1.1k

views

Gviz plotTracks stacking

updated 7.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 7.7 years ago by shuoguo ▴ 10

votes

replies

1.0k

views

gviz plottracks ideogramtrack

7.1 years ago cristianrohr768 • 0

votes

replies

983

views

Gviz plotTracks

updated 4.1 years ago by Robert Ivanek ▴ 730 • written 4.2 years ago by syliang • 0

votes

956

views

Gviz plotTracks

7.3 years ago rubi ▴ 110

9 results • Page 1 of 1

Recent ...

Replies

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0