Bioconductor PlotTracks

Showing : plotTracks • reset

votes

replies

2.7k

views

Gviz-package biomart plottracks ucsctrack stickleback

updated 7.1 years ago by florian.hahne@novartis.com ★ 1.6k • written 7.1 years ago by br • 0

vote

replies

1.4k

views

gviz plottracks generegiontrack

5.3 years ago gpwhiz ▴ 10

votes

replies

1.3k

views

gviz granges plottracks

7.2 years ago Adam • 0

votes

replies

1.2k

views

gviz plottracks alignmentstrack

updated 7.2 years ago by hesham.gibriel • 0 • written 7.2 years ago by TimothéeFlutre ▴ 80

votes

replies

1.0k

views

gviz plottracks ideogramtrack

7.1 years ago cristianrohr768 • 0

votes

replies

1.1k

views

gviz gviz-package datatrack plottracks

6.1 years ago stephen.williams ▴ 10

votes

1.1k

views

Gviz plotTracks stacking

updated 7.6 years ago by florian.hahne@novartis.com ★ 1.6k • written 7.6 years ago by shuoguo ▴ 10

votes

replies

974

views

Gviz plotTracks

updated 4.1 years ago by Robert Ivanek ▴ 730 • written 4.1 years ago by syliang • 0

votes

951

views

Gviz plotTracks

7.3 years ago rubi ▴ 110

9 results • Page 1 of 1

Recent ...

Replies

Comment: significant difference of p-values with dream() after updating VariancePartition by gabriel.hoffman ▴ 100

See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…

Comment: A ComBat-seq issue: the covariates are confounded by W. Evan Johnson ▴ 850

This is only partially confounded because there is overlap between the batches -- they both have GFP controls that can be used to remove ba…

Answer: Different number of exons in reference genome affects DEXSeq analysis by Alejandro Reyes ★ 1.9k

Likely the new annotation that you are using has more annotated isoforms, and thus the exons are splitted into more disjoint exonic bins. I…

Answer: Adding columns to DEXSeqResults object by Alejandro Reyes ★ 1.9k

I'd have a look into the match function, that could give you a mapping between the ids in the dxr1 object and your data frame of gene symbo…

Answer: rlog transformation by Michael Love 41k

It is dependent on the other samples in the dataset.

Votes

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

A: Using GRanges and IRanges to simply get all chromosome data

Awards • All

Popular Question to W. Evan Johnson ▴ 850

Popular Question to Alejandro Reyes ★ 1.9k