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plotcounts
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Change order of conditions when plotting: plotCounts {DESeq2}
R
deseq2
plotcounts
5.0 years ago • updated 4.9 years ago
ecg1g15
▴ 20
0
votes
1
reply
1.3k
views
plot statistic values in a DEseq2 plotCounts plot
deseq2
plotCounts
pvalues
RNAseq
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
anne.hoffrichter
• 0
0
votes
5
replies
1.3k
views
Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2
plotCounts
rowRanges
updated 5.7 years ago by
Michael Love
41k • written 5.7 years ago by
I.Castanho
▴ 50
0
votes
2
replies
1.5k
views
How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2
plotCounts
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
elizabethe819
• 0
1
vote
4
replies
1.6k
views
plotCounts to visualize variations of a specific genes along conditions
DESeq2
plotCounts
vst
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Laia
▴ 10
1
vote
6
replies
1.5k
views
PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2
PlotCounts
14 months ago
annamariabugaj
▴ 10
0
votes
1
reply
940
views
Deseq2 how to get input data for plotCounts for a single gene
deseq2
plotcounts
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
sunthomas
• 0
7 results • Page
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Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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