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plotmds
•
reset
1
vote
2
replies
772
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loading scores using plotMDS in limma
plotMDS
limma
9 months ago • updated 8 months ago
Cen
• 0
1
vote
3
replies
1.8k
views
Making MDS plot
plotMDS
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
• 0
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
2
votes
2
replies
1.2k
views
plotMDS dimensions bug
limma
plotMDS
2.7 years ago
jamie.gearing
▴ 60
2
votes
8
replies
3.7k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
0
votes
1
reply
723
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Alexander Azarian
▴ 30
0
votes
0
replies
914
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.1 years ago
Larry K.
• 0
3
votes
7
replies
5.7k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
4
votes
6
replies
1.5k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.6 years ago
fawazfebin
▴ 60
3
votes
1
reply
2.0k
views
column nubering plotMDS
edger
plotmds
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
mictadlo
▴ 10
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.6 years ago by
Jeff Leek
▴ 650 • written 7.7 years ago by
svlachavas
▴ 830
0
votes
0
replies
1.1k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.0 years ago
Adam
• 0
12 results • Page
1 of 1
Recent ...
Replies
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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