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Showing :
plotmds
•
reset
3
votes
7
replies
5.7k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.3 years ago
dacaba.92
▴ 10
2
votes
8
replies
3.7k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
3
votes
1
reply
1.9k
views
column nubering plotMDS
edger
plotmds
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
mictadlo
▴ 10
1
vote
3
replies
1.7k
views
Making MDS plot
plotMDS
limma
updated 10 months ago by
Gordon Smyth
50k • written 10 months ago by
liujy4
• 0
1
vote
1
reply
1.6k
views
Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays
sva
combat sva
batch effect
plotMDS
updated 7.6 years ago by
Jeff Leek
▴ 650 • written 7.6 years ago by
svlachavas
▴ 830
4
votes
6
replies
1.5k
views
EdgeR: Replicate samples diverge in MDS plot
edger
plotmds
6.6 years ago
fawazfebin
▴ 60
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
2
votes
2
replies
1.2k
views
plotMDS dimensions bug
limma
plotMDS
2.7 years ago
jamie.gearing
▴ 60
0
votes
0
replies
1.1k
views
Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl
plot3d
plotmds
8.0 years ago
Adam
• 0
0
votes
0
replies
910
views
Using log2FC distance matrix in Boot.Phylo to create bootstrapped trees
tree
bootstrap
dgelist
plotmds
6.1 years ago
Larry K.
• 0
1
vote
2
replies
757
views
loading scores using plotMDS in limma
plotMDS
limma
8 months ago
Cen
• 0
0
votes
1
reply
720
views
Visualization of analysis of multiple cell lines
plotMDS
Cell lines
limma
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Alexander Azarian
▴ 30
12 results • Page
1 of 1
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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