Bioconductor Plotpca

Showing : plotpca • reset

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704

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Rstudio plotPCA DESeq2

10 months ago yee • 0

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947

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plotMA ggplot2 plotPCA DESeq2

updated 12 months ago by Michael Love 42k • written 12 months ago by sara.jacobson • 0

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4.5k

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plotPCA PCA

updated 18 months ago by hediatnani • 0 • written 18 months ago by Yijing • 0

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DESeq2 plotPCA

updated 4 months ago by Daniele • 0 • written 2.7 years ago by synat.keam • 0

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plotpca DESeq2

2.8 years ago • updated 2.7 years ago bjen731 ▴ 10

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1.6k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.4 years ago elizabethe819 • 0

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DESeq2 RNASeq plotpca

updated 3.7 years ago by Michael Love 42k • written 3.7 years ago by s1760083 • 0

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1.2k

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deseq2 biplot plotpca

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by ecg1g15 ▴ 30

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756

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deseq2 PlotPCA draw.triple.venn

updated 6.1 years ago by Michael Love 42k • written 6.1 years ago by N. Perera • 0

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733

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deseq2 plotpca

updated 6.1 years ago by Michael Love 42k • written 6.1 years ago by snp31 • 0

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deseq2 plotpca PCa

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by lirongrossmann ▴ 80

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3.5k

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deseq2 rlog variancestabilizingtransformation plotpca pca

7.0 years ago lirongrossmann ▴ 80

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3.4k

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DESeq2 plotPCA rlog transformation vsd

7.2 years ago Jane Merlevede ▴ 90

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plotPCA deseq2 labels

updated 7.8 years ago by Federico Marini ▴ 180 • written 7.8 years ago by al-ash ▴ 50

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pca plotpca

8.0 years ago marianarochadesouza • 0

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1.7k

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deseq2 plotPCA PCA rna-seq

8.4 years ago newsomew13 • 0

16 results • Page 1 of 1

Recent ...

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Comment: heatmap with batch effect by James W. MacDonald 67k

When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…

Comment: Highly DE genes but small count difference within conditions by bioshot.com • 0

These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…

Comment: miRTarRnaseq library by María Calvo • 0

Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…

Comment: heatmap with batch effect by tothuhien • 0

Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…

Votes

GSVA ssGSEA vs. Broad implementation of ssGSEA

Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

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Scholar to ATpoint ★ 4.5k