Bioconductor Plotpca

Showing : plotpca • reset

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41k

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plotPCA deseq2 labels

updated 7.3 years ago by Federico Marini ▴ 150 • written 7.3 years ago by al-ash ▴ 50

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7.1k

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deseq2 plotpca PCa

updated 6.5 years ago by Michael Love 41k • written 6.5 years ago by lirongrossmann ▴ 80

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6.3k

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plotpca DESeq2

2.3 years ago bjen731 ▴ 10

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3.1k

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deseq2 rlog variancestabilizingtransformation plotpca pca

6.6 years ago lirongrossmann ▴ 80

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3.1k

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DESeq2 plotPCA rlog transformation vsd

6.8 years ago Jane Merlevede ▴ 90

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3.0k

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plotPCA PCA

updated 12 months ago by hediatnani • 0 • written 13 months ago by Yijing • 0

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2.3k

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DESeq2 plotPCA

2.2 years ago • updated 2.1 years ago synat.keam • 0

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1.5k

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deseq2 plotPCA PCA rna-seq

7.9 years ago newsomew13 • 0

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1.3k

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plotPCA DESeq2 RUVSeq removebatcheffect()

3.0 years ago elizabethe819 • 0

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1.0k

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deseq2 biplot plotpca

updated 4.2 years ago by Michael Love 41k • written 4.3 years ago by ecg1g15 ▴ 20

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969

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pca plotpca

7.5 years ago marianarochadesouza • 0

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862

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DESeq2 RNASeq plotpca

updated 3.2 years ago by Michael Love 41k • written 3.2 years ago by s1760083 • 0

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636

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deseq2 PlotPCA draw.triple.venn

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by N. Perera • 0

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610

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plotMA ggplot2 plotPCA DESeq2

updated 6 months ago by Michael Love 41k • written 6 months ago by sara.jacobson • 0

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596

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deseq2 plotpca

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by snp31 • 0

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337

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Rstudio plotPCA DESeq2

5 months ago • updated 4 months ago yee • 0

16 results • Page 1 of 1

Recent ...

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k