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plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
updated 3.7 years ago by
suman
• 0 • written 3.7 years ago by
Bethan
• 0
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Answer: single cell RNA seq pseudobulk batch correction
by
James W. MacDonald
67k
You can exclude the females from the non-responders.
Answer: Normalized counts to be used in decoupleR from deseq2 results
by
James W. MacDonald
67k
No, you never use normalized counts for anything but plotting. Can you point out the example that uses normalized counts?
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
If you care to know more about the process, there is a [GitHub with all the code][1]. It's pretty complicated though - the readme alone is …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks; I did not know which file exactly is being used. Good catch regarding the discrepancy between the 2 web pages. I will get in touch …
Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
The data for the `OrgDb` packages comes directly from NCBI, and in this case the symbols come from the gene_info.gz file you [can get from …
Votes
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Comment: limma technical repeat correction
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