Showing : polyester • reset
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Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester dispersion
updated 5 months ago by 34k • written 5 months ago by • 0
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155
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Error message
polyester
updated 7 months ago by 2.8k • written 7 months ago by • 0
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2
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243
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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 10 months ago by 43k • written 10 months ago by ▴ 60
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Polyester - simulate_experiment_countmat with gtf
polyester
17 months ago liorglic ▴ 10
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Polyester's simulate_experiment man pages / vignette description
polyester
23 months ago Michael Love 34k
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
3.8 years ago fa.gholizadeh89 • 0
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2
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 3.8 years ago by ▴ 210 • written 3.8 years ago by • 0
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724
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
4.1 years ago sseo2 • 0
2
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1
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715
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polyester: adding noise to RNASeq counts?
rnaseq polyester
updated 5.2 years ago by ▴ 210 • written 5.2 years ago by • 0
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7
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886
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Using Polyester to simulate large number of reads from a large transcriptome
polyester rnaseq
updated 5.3 years ago by ▴ 10 • written 5.3 years ago by • 0
10 results • Page 1 of 1
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Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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