Showing : polyester • reset
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Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester dispersion
updated 26 days ago by 32k • written 4 weeks ago by • 0
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1
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82
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Error message
polyester
updated 11 weeks ago by 2.6k • written 11 weeks ago by • 0
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2
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155
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RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester simulation RNA-seq syntheticdata
updated 5 months ago by 42k • written 5 months ago by ▴ 60
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97
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Polyester - simulate_experiment_countmat with gtf
polyester
13 months ago liorglic ▴ 10
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98
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Polyester's simulate_experiment man pages / vignette description
polyester
19 months ago Michael Love 32k
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443
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Could an experienced user of Polyester help me with some questions?
rna-seq polyester simulation time course
3.4 years ago fa.gholizadeh89 • 0
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2
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589
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How to simulate a count matrix using Polyester
simulation count matrix RNA-seq Polyester
updated 3.4 years ago by ▴ 210 • written 3.4 years ago by • 0
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682
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Polyester - creating simulated reads based on raw count matrix
polyester rnaseq simulation
3.8 years ago sseo2 • 0
2
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1
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644
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polyester: adding noise to RNASeq counts?
rnaseq polyester
updated 4.9 years ago by ▴ 210 • written 4.9 years ago by • 0
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7
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741
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Using Polyester to simulate large number of reads from a large transcriptome
polyester rnaseq
updated 4.9 years ago by ▴ 10 • written 4.9 years ago by • 0
10 results • Page 1 of 1
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Answer: DiffBind by Rory Stark ★ 3.8k
I'll answer the second question first. You should not accessing the `$binding` matrix directly -- the chromosome names are factor numbers,…
Comment: How to download the ChAMP dependency ChAMPdata by shepherl 2.6k
You could try increasing the timeout limit for downloading files. I increased mine in a `.Rprofile` script so its persistent in all sessio…
Comment: DiffBind reporting error by Rory Stark ★ 3.8k
If you could give me access to your `dbind_de` object, I can have a look at what is going on. it would help to see the sequence of calls yo…
Comment: limma - removing samples? by RMP87 • 0
Thank you very much for the explanation. Making it more precise. Could I analyze and normalize all samples from a dataset even though I had…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ? by Saulius • 0
Yes - I think you are right once more. Thanks for taking so much time to look into this. Size factors come in twice in the code of `cqn`: …
Votes
Effect of feature number on adjusted p-values
Effect of feature number on adjusted p-values
A: Using DADA2 output for DESeq2
Answer: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ?
Comment: Error wth Installation BiocManager
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