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polyester
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1.8k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 7.9 years ago by
jmfu
▴ 10 • written 7.9 years ago by
aditya892
• 0
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.4 years ago by
Alyssa Frazee
▴ 210 • written 6.4 years ago by
fa.gholizadeh89
• 0
0
votes
2
replies
1.5k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Endre Sebestyén
▴ 70
0
votes
1
reply
416
views
polyester biases
polyester
updated 11 months ago by
Michael Love
41k • written 11 months ago by
Seongwoo Han
▴ 10
2
votes
1
reply
1.4k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 7.8 years ago by
Alyssa Frazee
▴ 210 • written 7.8 years ago by
krishna312
• 0
0
votes
1
reply
666
views
Error message
polyester
updated 3.2 years ago by
shepherl
3.8k • written 3.2 years ago by
avaniknejad686
• 0
0
votes
0
replies
597
views
Polyester - simulate_experiment_countmat with gtf
polyester
4.0 years ago
liorglic
▴ 10
0
votes
0
replies
971
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.4 years ago
fa.gholizadeh89
• 0
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.7 years ago
sseo2
• 0
0
votes
0
replies
444
views
polyester running question
polyester
17 months ago
Seongwoo Han
▴ 10
0
votes
0
replies
551
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
catalina.gonzalez-gomez
• 0
1
vote
0
replies
593
views
Polyester's simulate_experiment man pages / vignette description
polyester
4.5 years ago
Michael Love
41k
12 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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