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polyester
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7
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1.7k
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Using Polyester to simulate large number of reads from a large transcriptome
polyester
rnaseq
updated 7.8 years ago by
jmfu
▴ 10 • written 7.8 years ago by
aditya892
• 0
0
votes
2
replies
1.4k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Endre Sebestyén
▴ 70
0
votes
2
replies
1.3k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.3 years ago by
Alyssa Frazee
▴ 210 • written 6.3 years ago by
fa.gholizadeh89
• 0
2
votes
1
reply
1.3k
views
polyester: adding noise to RNASeq counts?
rnaseq
polyester
updated 7.7 years ago by
Alyssa Frazee
▴ 210 • written 7.7 years ago by
krishna312
• 0
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.6 years ago
sseo2
• 0
0
votes
0
replies
962
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.3 years ago
fa.gholizadeh89
• 0
0
votes
1
reply
646
views
Error message
polyester
updated 3.1 years ago by
shepherl
3.8k • written 3.1 years ago by
avaniknejad686
• 0
0
votes
0
replies
573
views
Polyester - simulate_experiment_countmat with gtf
polyester
4.0 years ago
liorglic
▴ 10
1
vote
0
replies
571
views
Polyester's simulate_experiment man pages / vignette description
polyester
4.4 years ago
Michael Love
41k
0
votes
0
replies
541
views
Range value of the dispersion parameters (a1, alpha 0 and sigmad)
polyester
dispersion
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
catalina.gonzalez-gomez
• 0
0
votes
0
replies
435
views
polyester running question
polyester
16 months ago
Seongwoo Han
▴ 10
0
votes
1
reply
390
views
polyester biases
polyester
updated 10 months ago by
Michael Love
41k • written 10 months ago by
Seongwoo Han
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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