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Recent ...
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Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
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0
Thanks ATpoint for you advice. Just don't understand the math behind the change in raw p value in this case. I think it is important to und…
Answer: Why p value inconsistent when using different number of pathway score?
by
ATpoint
★
4.0k
Same answer as here: https://support.bioconductor.org/p/9157606/
Adding or removing data (samples, genes, pathways, observations...) chang…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
•
0
Thanks Robert!
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★
3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
•
0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
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