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Answer: Highly DE genes but small count difference within conditions by Michael Love 42k

Could be due to controlling for sex. You have only three samples? Dropping sex would likely remove such genes as marginally you don't se…

Comment: How to control batch effect if Group and batch are same? by earntodiessaz • 0

These are the types of games that can be found at **[lol beans][1]**. To the fullest extent possible, do it. Before engaging in activities …

Comment: Unevaluated error in ChIPQC combined with BiocParallel by earntodiessaz • 0

Playing video games online at **[Slope][1]** is one of the ways that we get to show off our muscles to all of our new friends that we have …

Comment: Mostly increased counts in differentially accessible peaks using DESeq2 by ATpoint ★ 4.5k

It is hard to comment here. My suggestion is: - label the IGV track, it's unclear which lane is which sample - normalize the track with th…

Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA by Robert Castelo ★ 3.4k

Hi, I can only speak for the GSVA implementation of the ssGSEA algorithm, which as you already know, it corresponds to the algorithm descri…

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GSVA ssGSEA vs. Broad implementation of ssGSEA

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Scholar to ATpoint ★ 4.5k