Showing : pre-filtering • reset
6
votes
4
replies
2.0k
views
discrepance in DESeq2 results with different design structures
deseq2 differential expression independent filtering pre-filtering design matrix
7.1 years ago Assa Yeroslaviz ★ 1.5k
5
votes
8
replies
4.8k
views
DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq data
deseq2 pre-filtering
updated 5.3 years ago by 37k • written 5.3 years ago by ▴ 10
2
votes
7
replies
2.5k
views
Pre-filtering genes counts vs normalised counts DESeq2
deseq2 pre-filtering
updated 4.0 years ago by 37k • written 4.0 years ago by ▴ 20
1
vote
1
reply
1.5k
views
Does manual pre-filtering of the data on read counts violate the assumptions of the dispersion estimation in DESeq2?
deseq2 pre-filtering
updated 7.1 years ago by 37k • written 7.1 years ago by ★ 1.9k
1
vote
6
replies
1.1k
views
Nonspecific filtering of microarray data
microarray affymetrix microarrays pre-filtering filtering nonspecific filtering
updated 5.0 years ago by 13k • written 5.0 years ago by • 0
0
votes
2
replies
894
views
Error with DEXSeqDataSet object after performing pre-filter
DEXSeq rownames pre-filtering
updated 6.3 years ago by 13k • written 6.3 years ago by • 0
6 results • Page 1 of 1
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Replies
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Answer: Package name already exists due to previous issue by James W. MacDonald 59k
You should probably send this question to bioc-devel@r-project.org
Comment: edgeR - how to convert DGELRT and other classes to .csv files by Benjamin • 0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by James W. MacDonald 59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent. ``` > txdb <- m…
Votes
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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