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pre-filtering
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6
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4
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2.6k
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discrepance in DESeq2 results with different design structures
deseq2
differential expression
independent filtering
pre-filtering
design matrix
9.0 years ago
Assa Yeroslaviz
★ 1.5k
5
votes
8
replies
6.7k
views
DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq data
deseq2
pre-filtering
updated 7.2 years ago by
Michael Love
41k • written 7.2 years ago by
Zach Roe
▴ 10
3
votes
7
replies
5.0k
views
Pre-filtering genes counts vs normalised counts DESeq2
deseq2
pre-filtering
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
bekah
▴ 40
1
vote
1
reply
1.9k
views
Does manual pre-filtering of the data on read counts violate the assumptions of the dispersion estimation in DESeq2?
deseq2
pre-filtering
updated 9.0 years ago by
Michael Love
41k • written 9.0 years ago by
Johannes Rainer
★ 2.0k
1
vote
6
replies
1.9k
views
Nonspecific filtering of microarray data
microarray
affymetrix microarrays
pre-filtering
filtering
nonspecific filtering
updated 6.9 years ago by
Wolfgang Huber
★ 13k • written 6.9 years ago by
n.lu
• 0
0
votes
2
replies
1.3k
views
Error with DEXSeqDataSet object after performing pre-filter
DEXSeq
rownames
pre-filtering
updated 8.3 years ago by
Wolfgang Huber
★ 13k • written 8.3 years ago by
arom2
• 0
6 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
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