Showing : preprocesscore • reset
0
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6
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1.9k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 110
3
votes
9
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2.3k
views
Installing 'affy' package on MacOS M2 chip
nlme affy preprocessCore
updated 18 months ago by 65k • written 18 months ago by • 0
0
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2
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1.8k
views
[R] BioC 2.3 standard installation
Cancer preprocessCore Cancer preprocessCore
15.4 years ago Hervé Pagès 16k
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2
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2.7k
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installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 15.7 years ago by ★ 6.5k • written 15.6 years ago by ▴ 20
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1
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1.3k
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Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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1
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3.0k
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2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
0
votes
1
reply
953
views
justRMA() using different versions of affy
affy preprocessCore xps affy preprocessCore xps
updated 14.8 years ago by ★ 1.2k • written 14.8 years ago by ★ 3.9k
0
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1
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4.1k
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preprocessCore problem: normalize.quantiles error
preprocesscore error normalization
updated 8.8 years ago by ▴ 760 • written 8.8 years ago by ▴ 10
1
vote
6
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1.7k
views
oligo: crash/segfault when fitting probelevel model
oligo openblas preprocessCore
updated 6.7 years ago by 65k • written 6.7 years ago by ★ 3.9k
2
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3
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1.7k
views
Bioconductor: quantile normalization
normalization quantile preprocesscore
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
0
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2
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2.6k
views
Cannot load preprocessCore.so
preprocessCore preprocessCore
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 300
0
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1
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1.2k
views
Fwd: problems installing 'affy'
affy preprocessCore affy preprocessCore
updated 14.8 years ago by 25k • written 14.8 years ago by ▴ 20
0
votes
1
reply
1.6k
views
problem with preprocessCore
preprocessCore preprocessCore
updated 12.3 years ago by 25k • written 12.3 years ago by ▴ 200
0
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1
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1.5k
views
RMA normalization in large number of chips
Normalization probe preprocessCore Normalization probe preprocessCore
updated 10.2 years ago by 65k • written 10.2 years ago by ▴ 40
0
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0
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985
views
justRMA() using different versions of affy
Normalization affy preprocessCore xps Normalization affy preprocessCore xps
14.8 years ago cstrato ★ 3.9k
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0
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964
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Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
11.0 years ago Matthew McCall ▴ 830
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1.2k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
15.8 years ago Luc Vallieres ▴ 20
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1.0k
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Bioconductor Digest, Vol 100, Issue 28
GO TimeCourse genefilter timecourse ABarray preprocessCore GeneSelector GO TimeCourse
12.8 years ago Dennis.Burian@faa.gov ▴ 90
18 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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