Showing : preprocessing • reset
5
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4
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1.7k
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meta analysis of microarrays of small sample sizes
preprocessing microarray genemeta
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 20
5
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5
replies
2.7k
views
Joint Preprocessing of RNA-Seq and Microarray datasets
preprocessing rnaseq microarray
updated 8.4 years ago by 50k • written 8.4 years ago by ▴ 30
4
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6
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552
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 10 weeks ago by 50k • written 3 months ago by • 0
4
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0
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1.7k
views
how to test for genes of interest?
Normalization Preprocessing limma Normalization Preprocessing limma
15.8 years ago Gordon Smyth 50k
3
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2
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2.9k
views
Nanostring ncounterdata - DESeq
RNASeq Normalization Preprocessing DESeq RNASeq Normalization Preprocessing DESeq
updated 12.8 years ago by ★ 3.7k • written 12.8 years ago by ▴ 20
3
votes
9
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1.9k
views
About the best use of frma for several GEO Series
frma normalization preprocessing
updated 7.3 years ago by ▴ 830 • written 7.3 years ago by ▴ 20
2
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2
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1.3k
views
AgilentG4502A_07_2 and AgilentG4502A_07_1
limma read.maimages normalization preprocessing
updated 6.4 years ago by 50k • written 6.4 years ago by ▴ 10
2
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2
replies
971
views
Preprocessing Issue
sva RNASeq Preprocessing Normalization BatchEffect
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
1
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4
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2.4k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 17 months ago by • 0
1
vote
6
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2.2k
views
How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 6.1 years ago by ★ 3.9k • written 6.1 years ago by ▴ 260
1
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1
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1.5k
views
Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 7.6 years ago by ★ 6.5k • written 7.6 years ago by • 0
1
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0
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1.6k
views
Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
7.7 years ago t.kuilman ▴ 170
0
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0
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885
views
handling scanalyze output format
Preprocessing convert Preprocessing convert
20.4 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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694
views
option rm.mask=TRUE in ReadAffy
Normalization Preprocessing hu6800 probe Normalization Preprocessing hu6800 probe
20.5 years ago t-kawai@hhc.eisai.co.jp ▴ 50
0
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1
reply
1.2k
views
HTqPCR useful for ChIP data ?
Preprocessing Clustering HTqPCR Preprocessing Clustering HTqPCR
updated 17 months ago by • 0 • written 12.3 years ago by ▴ 10
0
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0
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776
views
short course announcement
Microarray Normalization Preprocessing Classification Clustering Microarray Normalization
20.6 years ago mark@biostat.ucsf.edu ▴ 30
0
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0
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1.1k
views
RE: Bioconductor Digest, Vol 1, Issue 271
Normalization Preprocessing probe affy hexbin Normalization Preprocessing probe affy
21.1 years ago Huang, Cheng-Cheng NIH/NCI ▴ 30
0
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1
reply
2.2k
views
Recurrent error with Flashclust
Normalization Preprocessing probe Normalization Preprocessing probe
updated 13.2 years ago by ★ 3.0k • written 13.2 years ago by ▴ 340
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0
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893
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last call for Boston bioc Training, 13-15 july, content revised
Annotation GO Preprocessing Clustering Yeast probe RSNPper biomaRt Annotation GO Yeast
17.8 years ago Vincent J. Carey, Jr. 6.7k
0
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1
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1.2k
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number of Replicates - Fold change vs Limma or Siggenes/SAM
Preprocessing gcrma Preprocessing gcrma
updated 19.9 years ago by ▴ 30 • written 19.9 years ago by ▴ 90
0
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0
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1.1k
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technical replicates (again!): a summary
Microarray GO Preprocessing Cancer vsn Microarray GO Preprocessing Cancer vsn
20.1 years ago Ramon Diaz ★ 1.1k
0
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0
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656
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[BioCTrain] announcement: training option Boston May 2003
Preprocessing Infrastructure oligo Preprocessing Infrastructure oligo
21.1 years ago Vincent Carey ▴ 10
0
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6
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1.7k
views
RMA vs VSN
Preprocessing vsn Preprocessing vsn
19.9 years ago Roger Vallejo ▴ 120
0
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0
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700
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Re: RMA vs VSN
Normalization Preprocessing Cancer probe affy vsn gcrma Normalization Preprocessing probe
19.8 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
961
views
[COURSE] Computational and Statistical Aspects of Microarray Analysis (III)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.4 years ago stefano iacus ▴ 430
0
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0
replies
783
views
how to check reference quality?
Microarray Preprocessing Survival limma Microarray Preprocessing Survival limma
19.2 years ago Silvano Piazza ▴ 50
0
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0
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1.1k
views
[COURSE REMINDER] Computational and Statistical Aspects of Microarray Analysis
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
19.2 years ago stefano iacus ▴ 430
0
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3
replies
852
views
suggestion : new object for exprSet
Preprocessing gcrma Preprocessing gcrma
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ★ 1.8k
0
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2
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900
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ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
0
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0
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792
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.9 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.0k
views
Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
20.1 years ago Debjani Bhowmick ▴ 30
0
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0
replies
972
views
RE: Bioconductor Digest, Vol 13, Issue 27
Proteomics Normalization GO Preprocessing Clustering moe430a moe430b cdf probe affy GO
20.1 years ago Victor M Trevino-Alvarado ▴ 20
0
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0
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1.0k
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Bioconductor 1.1 Released
Preprocessing Cancer graph Preprocessing Cancer graph
21.4 years ago Jeff Gentry ★ 3.9k
0
votes
0
replies
761
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dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
17.2 years ago Henrik Bengtsson ★ 2.4k
0
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0
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1.1k
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
18.3 years ago Wolfgang Huber ★ 13k
0
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0
replies
578
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preprocessing separately from each other
Preprocessing Preprocessing
18.5 years ago Mohammad Esad-Djou ▴ 520
0
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1
reply
1.0k
views
questions about Affy package from new user
Proteomics Normalization GO Preprocessing Clustering probe affy PROcess mscalib GO probe
updated 20.1 years ago by 65k • written 20.1 years ago by ▴ 210
0
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0
replies
808
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Wrapper of X-tandem into BioC for Proteomics
Preprocessing Preprocessing
18.6 years ago Simon Lin ▴ 210
0
votes
1
reply
901
views
compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 520
0
votes
1
reply
1.1k
views
GCRMA
Microarray Preprocessing gcrma BRAIN Microarray Preprocessing gcrma BRAIN
updated 18.3 years ago by ★ 2.0k • written 18.3 years ago by ▴ 20
0
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0
replies
1.1k
views
COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray Proteomics Normalization Preprocessing Cancer Microarray Proteomics Cancer
18.2 years ago stefano iacus ▴ 430
0
votes
3
replies
1.0k
views
ad hoc tools for affy tiling arrays?
Normalization Preprocessing gcrma Normalization Preprocessing gcrma
updated 18.2 years ago by ▴ 310 • written 18.2 years ago by ★ 6.5k
0
votes
0
replies
783
views
ANN: Introductory R and Bioconductor Mini Course , Seattle, April 12-14
Microarray Annotation Preprocessing Cancer Microarray Annotation Preprocessing Cancer
18.2 years ago Nianhua Li ▴ 870
0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray Normalization Preprocessing Bayesian Clustering TimeCourse Cancer affy vsn LPE
18.2 years ago McGee, Monnie ▴ 300
0
votes
0
replies
1.0k
views
[COURSE] CSAMA'06, few places available
Microarray Proteomics Preprocessing Cancer Microarray Proteomics Preprocessing Cancer
18.0 years ago stefano iacus ▴ 430
0
votes
0
replies
574
views
How to create a MAList or ExprSet object from a matrix
Normalization Preprocessing probe Category Normalization Preprocessing probe Category
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
677
views
tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
17.4 years ago Johannes Freudenberg ▴ 30
0
votes
0
replies
626
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Preprocessing
17.4 years ago Mohammad Esad-Djou ▴ 520
0
votes
0
replies
629
views
tasks of Background Correction and PM Correction in Preprocessing methods
Preprocessing Cancer Preprocessing Cancer
17.4 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
3
replies
1.2k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 18.6 years ago by 50k • written 18.6 years ago by ▴ 270
50 results • Page 1 of 1
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Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
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Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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