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Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
Part 2; continuation of Part 1 above...
> # !! got same error as reported !!
>
> # ... but do these 150 LOCs have a GO annotat…
Comment: EnrichGO not working with db created from annotationhub
by
Guido Hooiveld
★
3.2k
I had a closer look at this, and the error you got is actually somewhat misleading; it is not that you are using the wrong ids (ids that ar…
Answer: DESeq2: Extracting Averaged Counts Information from dds and rld
by
vanbelj
▴
10
Below is a [solution][1] to extract and average counts across replicates from a dds using Base R. If you're familiar with ```limma``` you …
Comment: featureCounts: 0% successfully assigned fragments
by
KMS
•
0
Sorry for the incomplete information. I have bacterial RNASeq pair end data and using subread/Rsubread on Rstudio and ubuntu, after few sec…
Comment: Variance explained (coefficient of determination) in edgeR
by
Gordon Smyth
45k
No, you have it wrong way around.
If you want deviance explained by x1, then you need
```
R2_x1 <- ( deviance without x1 in model - devia…
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