Showing : probe • reset
0
votes
0
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491
views
Filtering single-channel Affymetrix probes
filtering probe MicroarrayData
20 months ago Fatemeh • 0
0
votes
0
replies
636
views
Probe Design questions
probe affy
3.6 years ago henry1995910343 • 0
4
votes
10
replies
2.5k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by ▴ 10
0
votes
8
replies
3.9k
views
Combining 2 datasets from 2 different RNAseq experiments
deseq2 normalization probe
updated 4.1 years ago by 41k • written 4.1 years ago by • 0
0
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0
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443
views
Program to calculate genetic distances with long sequences
probe go
4.1 years ago antoniorevail • 0
0
votes
5
replies
1.1k
views
Does anyone have experience using the massiR package?
massiR microarray R probe
4.6 years ago Steve Lowe ▴ 30
0
votes
0
replies
561
views
massiR Extracting and Plotting Y Chr Probe Data
probe microarray
4.6 years ago Steve Lowe ▴ 30
0
votes
1
reply
744
views
Determining survival correlation among probes
annotation probe microarray
4.7 years ago sbrackett007 • 0
0
votes
4
replies
1.1k
views
Cannot down load the "org.Hs.eg.db" completely
software error probe
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
2
votes
4
replies
1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.0 years ago s.goncalvesclaro ▴ 10
0
votes
2
replies
2.1k
views
liftover probe annotation from hg19 to hg38 for methylation array data using minfi (EPIC methylation array data)
annotation probe software error EPIC methylation array
5.1 years ago brendan.miller • 0
1
vote
3
replies
726
views
I can't install the package "matchprobes"
software error probe
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
0
votes
0
replies
701
views
How to merging multiple GSEs with different GPLs?
microarray probe R
5.2 years ago maryam.sabet • 0
0
votes
1
reply
1.1k
views
MCLUST: finding the best number of Gaussian components to fit my data
software error microarray probe annotation
updated 5.2 years ago by 41k • written 5.2 years ago by • 0
1
vote
2
replies
950
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
0
votes
0
replies
1.2k
views
Probe annotations for ABI Human Genome Survey V2 microarray using Oracle
annotation probe microarray abi human genome survey v2 Oracle
6.1 years ago judemtaylor • 0
0
votes
1
reply
968
views
index of probes in Illumina Infinium MethylationEPIC BeadChip
probe
6.2 years ago mcarmel • 0
4
votes
5
replies
2.2k
views
Retrieving probes mapping to gene ID in microarray analysis
microarray affymetrix probeset probe
updated 6.5 years ago by ★ 6.5k • written 6.5 years ago by • 0
0
votes
1
reply
1.2k
views
Multiple samples on the same graph
Pathview probe
updated 6.7 years ago by ★ 1.6k • written 6.8 years ago by • 0
0
votes
1
reply
870
views
probe set-gene relation
probe geneid probeset
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
1
vote
6
replies
1.6k
views
Remove a list of specific probes from an HTAFeatureSet
pd.clariom.d.human affy probe
updated 7.1 years ago by 65k • written 7.1 years ago by ▴ 40
1
vote
5
replies
1.1k
views
Filter out ranges by number of probes
probe ranges
updated 7.1 years ago by ★ 6.5k • written 7.1 years ago by ▴ 30
0
votes
0
replies
1.1k
views
removing probes representing in a certain beads
minfi probe preprocessing
7.2 years ago niutster • 0
0
votes
4
replies
1.8k
views
minfi probe removal
minfi probe
updated 7.2 years ago by 65k • written 7.2 years ago by • 0
1
vote
4
replies
2.0k
views
How to install old GenomicRanges 1.14.4 package ?
bioconductor R cancer probe deseq2
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
0
votes
1
reply
1.4k
views
'could not find function "R (>= 2.1"' while trying https://bioconductor.org/packages/3.2/bioc, trying https://bioconductor.org/packages/3.1/bioc …
cancer probe microarray
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
0
votes
1
reply
1.3k
views
Importing and Extracting Annotation
annotation zebrafish probe
updated 8.0 years ago by 65k • written 8.0 years ago by • 0
0
votes
5
replies
1.7k
views
"oligo" package: probenames/probeinfo different from expr-set (read.cellfles): miRNA 4.0 (affy)
microarray probe annotation affy
8.2 years ago dietmar.pils • 0
0
votes
0
replies
1.2k
views
Help for affy
affy process probe
8.2 years ago weizhong_2007 • 0
2
votes
3
replies
1.8k
views
i need AGI code as my probset
affy cdf probe
8.4 years ago • updated 8.2 years ago Angel ▴ 40
0
votes
3
replies
11k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
1
vote
4
replies
1.4k
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error probe affy RMA
8.8 years ago Angel ▴ 40
2
votes
2
replies
2.5k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
8.8 years ago metamaden ▴ 10
0
votes
2
replies
1.1k
views
difficulty in mapping gene names to probes coordinates in a celfile
microarray probe
updated 9.1 years ago by 65k • written 9.1 years ago by • 0
0
votes
3
replies
2.6k
views
filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
9.1 years ago alakatos ▴ 130
1
vote
2
replies
1.7k
views
array quality control, affy probes, contracts setting in limma, result interpretation and weights
limma affy probe qualitycontrol design and contrast matrix
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 130
0
votes
4
replies
1.7k
views
hugene10sttranscriptclusterACCNUM has no mappings
Annotation GO ChipDb probe
updated 9.6 years ago by ▴ 20 • written 9.6 years ago by ★ 7.2k
0
votes
0
replies
764
views
packages similar to Jetset but for mouse platforms
probe probe
9.6 years ago Laurent.Pays ▴ 20
0
votes
1
reply
951
views
hugene10sttranscriptclusterACCNUM has no mappings
GO probe GO probe
updated 9.6 years ago by 65k • written 9.6 years ago by ▴ 20
0
votes
5
replies
1.9k
views
Using custom CDF with 'make.cdf.env'
miRNA cdf probe miRNA cdf probe
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 13k
6
votes
2
replies
1.9k
views
Should I skip the eBayes step when using Limma for Affymetrix miRNA v1 chip?
miRNA cdf probe limma miRNA cdf probe limma
updated 9.6 years ago by 50k • written 9.7 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Filtering pmSequence based on probe target level for HTA 2.0 arrays
Annotation probe oligo Annotation probe oligo
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 590
0
votes
1
reply
1.1k
views
spike-in normalization with NormiR
Normalization GO probe Normalization GO probe
updated 9.7 years ago by 65k • written 9.7 years ago by ★ 13k
0
votes
0
replies
881
views
Microarray data normalization
Normalization GO Cancer probe affy Normalization GO Cancer probe affy
9.7 years ago Levi Waldron ▴ 80
0
votes
1
reply
1.8k
views
annotation for TAqman assay IDs
Annotation probe annotate Annotation probe annotate
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 10
0
votes
3
replies
1.1k
views
genefilter
probe probe
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 680
0
votes
0
replies
888
views
dmpFinder results
probe minfi probe minfi
9.7 years ago Giovanni Calice ▴ 160
0
votes
4
replies
1.8k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 9.8 years ago by 65k • written 9.8 years ago by ▴ 550
0
votes
0
replies
1.2k
views
R hthgu133afrmavecs_1.1.0 error: row.effects should sum to zero
GO probe PROcess frma GO probe PROcess frma
9.8 years ago Matthew McCall ▴ 830
0
votes
3
replies
1.1k
views
Problem with removing duplicated probes of datasets without annotation
Annotation probe Annotation probe
updated 9.8 years ago by ★ 13k • written 9.8 years ago by ★ 13k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k
Or that. ;-D
Answer: Error retrieving ensembl gene id using biomaRt... by Mike Smith ★ 6.5k
I think you have the assignment operator (`<-`) the wrong way round. It should be `df_biomrt_tmp <- getBM(...`
Answer: Error retrieving ensembl gene id using biomaRt... by James W. MacDonald 65k
I can't reproduce. ``` > library(biomaRt) Warning message: package 'biomaRt' was built under R version 4.3.2 > library(org.Hs.eg.db…
Comment: DESeq2 setting significant p-value by Michael Love 41k
``` > counts <- matrix(1:16, ncol=4, dimnames=list(letters[1:4],NULL)) > coldata <- data.frame(x=1:4) > DESeqDataSetFromMatrix(counts, cold…
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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