Showing : probe • reset
0
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2
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1.3k
views
Renaming row names (U133A/B joining problem)
Cancer probe Cancer probe
updated 18.7 years ago by 25k • written 18.7 years ago by ★ 1.9k
0
votes
0
replies
1.2k
views
Technical replicates in limma
probe affy limma probe affy limma
18.7 years ago Steve Taylor ▴ 100
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0
replies
725
views
Builing annotation package with AnnBuilder using gene symbol
Annotation Cancer probe AnnBuilder convert Annotation Cancer probe AnnBuilder convert
18.7 years ago John Zhang ★ 2.9k
0
votes
1
reply
719
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expression sets with probe names
probe vsn probe vsn
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ▴ 80
0
votes
1
reply
1.0k
views
gcrma and chip without mm values
probe gcrma probe gcrma
updated 18.7 years ago by ▴ 200 • written 18.7 years ago by ▴ 10
0
votes
4
replies
1.4k
views
Exclude probes that show sd above 0.1 between replicatevalues
probe probe
updated 18.7 years ago by ★ 1.9k • written 18.7 years ago by ▴ 550
0
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0
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1.5k
views
Exclude probes that show sd above 0.1 between replicate values
Genetics probe Genetics probe
18.7 years ago João Fadista ▴ 500
0
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0
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1.2k
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
18.7 years ago Paquet, Agnes ▴ 500
0
votes
3
replies
1.7k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 18.7 years ago by ▴ 870 • written 18.7 years ago by ▴ 20
0
votes
1
reply
1.4k
views
Limma 2.9.10: "Amean" missing
probe limma probe limma
updated 18.7 years ago by ▴ 50 • written 18.7 years ago by 53k
0
votes
1
reply
1.5k
views
accessing affybatch probe set name
probe probe
updated 18.8 years ago by ★ 6.5k • written 18.8 years ago by ▴ 80
0
votes
0
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1.2k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.8 years ago Wu, Xiwei ▴ 350
0
votes
0
replies
1.2k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray Clustering cdf probe affy affyPLM mmgmos Microarray Clustering cdf probe
18.8 years ago Richard Pearson ▴ 390
0
votes
0
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1.5k
views
dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Normalization Preprocessing probe affy Normalization Preprocessing probe affy
18.8 years ago Ben Bolstad ★ 1.2k
0
votes
0
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976
views
dChip v li.wong() (Was: Re: warnings from li wong summary method in expresso)
Microarray Normalization Preprocessing Cancer hgu133plus2 probe affy limma PROcess Cancer
18.8 years ago Henrik Bengtsson ★ 2.4k
0
votes
1
reply
1.3k
views
gcrma and chip without mm values
probe gcrma probe gcrma
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 80
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votes
0
replies
891
views
Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
18.8 years ago Manhong Dai ▴ 200
0
votes
0
replies
845
views
Limma - error when using duplicateCorrelation - Windows ver. Linux
Genetics probe limma Genetics probe limma
18.8 years ago Gordon Smyth 53k
0
votes
0
replies
714
views
Response - difference between hgu95aprobe and hgu95acdf
Microarray Cancer probe Microarray Cancer probe
18.9 years ago James W. MacDonald 68k
0
votes
0
replies
833
views
HGU133 spike-in
probe affy probe affy
18.9 years ago Talloen, Willem [PRDBE] ▴ 40
0
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0
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1.1k
views
Illumina annotation packages
WholeGenome Annotation probe WholeGenome Annotation probe
18.9 years ago Lynn Amon ▴ 110
0
votes
3
replies
1.9k
views
ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 18.9 years ago by ★ 13k • written 18.9 years ago by ▴ 510
0
votes
1
reply
1.2k
views
Affy! From raw data files to Summary expression value without expresso!
probe probe
updated 19.0 years ago by 68k • written 18.9 years ago by ▴ 100
0
votes
2
replies
608
views
How to get the number of Stat pairs used in MAS5
Microarray Normalization Cancer probe Microarray Normalization Cancer probe
updated 19.0 years ago by ▴ 20 • written 19.0 years ago by 68k
0
votes
1
reply
886
views
Probe Interrogation Positions of Affy chips
Normalization probe Normalization probe
updated 19.0 years ago by 68k • written 19.0 years ago by ▴ 830
0
votes
0
replies
505
views
How to get the number of Stat pairs used in MAS5
Normalization probe Normalization probe
19.0 years ago Julie Dickerson ▴ 20
0
votes
4
replies
1.5k
views
VSN exclusion of probes
probe vsn oligo probe vsn oligo
updated 19.0 years ago by ★ 13k • written 19.0 years ago by ▴ 330
0
votes
6
replies
1.9k
views
biomart scripting help
probe affy probe affy
updated 19.0 years ago by ▴ 380 • written 19.0 years ago by ▴ 320
0
votes
0
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873
views
tasks of Background Correction and PM Corr =?iso-8859-15?q?ection_in_Prepro
Microarray Preprocessing probe Microarray Preprocessing probe
19.0 years ago Johannes Freudenberg ▴ 30
0
votes
1
reply
1.1k
views
gcrma on PM-only Affy data
probe affy gcrma probe affy gcrma
updated 19.0 years ago by ▴ 200 • written 19.0 years ago by ★ 2.2k
0
votes
14
replies
2.7k
views
from rat codelink to human locuslink
probe probe
updated 19.0 years ago by ▴ 580 • written 19.0 years ago by ★ 1.2k
0
votes
0
replies
727
views
[Bioc-devel] I will succeed (hopefully) the installation of Bioconductor 2.0
probe affy oligo probe affy oligo
19.1 years ago Francois Pepin ★ 1.3k
0
votes
1
reply
1.1k
views
Mismatch probe handling for exon arrays
Cancer Breast probe affy plier Cancer Breast probe affy plier
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 310
0
votes
0
replies
666
views
FW: create probe file from CDF?
Genetics Cancer cdf probe gcrma Genetics Cancer cdf probe gcrma
19.1 years ago Lo, Ken ▴ 50
0
votes
0
replies
1.5k
views
limma: decideTests, which option to choose and nestedF pvalues
probe limma probe limma
19.1 years ago noel0925@sbcglobal.net ▴ 90
0
votes
1
reply
1.6k
views
Affymetrix Poly-A Controls
probe probe
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 340
0
votes
0
replies
1.7k
views
What to do with multiple probes in GSEA?
probe affy PROcess probe affy PROcess
19.1 years ago Dick Beyer ★ 1.4k
0
votes
6
replies
1.4k
views
probe level annotation
probe probe
19.1 years ago Shi, Tao ▴ 720
0
votes
1
reply
1.0k
views
RMA with few arrays
probe limma probe limma
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 340
0
votes
2
replies
1.1k
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 20
0
votes
2
replies
1.5k
views
genotyping RLMM probe level model?
SNP probe RLMM SNP probe RLMM
updated 19.2 years ago by ★ 4.3k • written 19.2 years ago by ▴ 170
0
votes
8
replies
2.0k
views
outlier removal from gene chip
probe probe
updated 19.2 years ago by ▴ 810 • written 19.2 years ago by ★ 1.2k
0
votes
0
replies
670
views
limma novice seeks guidance: 17 comparisons among 2 groups (size 4 & 8)
Plasmodium falciparum probe limma Plasmodium falciparum probe limma
19.2 years ago Paul Shannon ★ 1.1k
0
votes
2
replies
2.1k
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
19.2 years ago James W. MacDonald 68k
0
votes
3
replies
1.4k
views
summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Normalization probe affy affyio Normalization probe affy affyio
updated 19.2 years ago by ★ 1.2k • written 19.2 years ago by ▴ 420
0
votes
2
replies
1.2k
views
Question on AffyBatch
hgu133plus2 probe hgu133plus2 probe
updated 19.2 years ago by ★ 13k • written 19.2 years ago by ▴ 100
0
votes
1
reply
1.6k
views
R: Degradation plots - Affy package
Transcription qPCR Genetics probe affy Transcription qPCR Genetics probe affy
updated 19.2 years ago by ▴ 360 • written 19.2 years ago by ▴ 10
0
votes
7
replies
2.2k
views
annotation package for chicken affyprobes
Annotation Organism Gallus gallus probe AnnBuilder Annotation Organism Gallus gallus probe
updated 19.2 years ago by ▴ 180 • written 19.3 years ago by ▴ 870
0
votes
1
reply
1.3k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 19.2 years ago by 68k • written 19.2 years ago by ▴ 20
0
votes
0
replies
2.2k
views
Limma weights, P values and differential expression
Normalization Bayesian Regression probe limma Normalization Bayesian Regression probe
19.2 years ago Gordon Smyth 53k
1,388 results • Page 19 of 28
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
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