updated 8.9 years ago by
Aaron Lun
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written 8.9 years ago by
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8.0 years ago
lucia.caceres
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updated 8.4 years ago by
thomas.leete
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written 8.5 years ago by
Anne Deslattes Mays
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updated 14 months ago by
hyejo
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written 6.1 years ago by
Assa Yeroslaviz
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updated 8.0 years ago by
Matthew Ritchie
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written 8.0 years ago by
lucia.caceres
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updated 5.9 years ago by
sdalin
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written 7.1 years ago by
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6.1 years ago
Assa Yeroslaviz
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴
10
With all my love, thank you Guido, GOxploreR beeing a big ally for me.
I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★
1.3k
You didn't generate it with an experiment, you made it up:
Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★
1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong.
Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
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