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promoter
•
reset
0
votes
2
replies
1.0k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
2.6 years ago
Arslan
• 0
3
votes
6
replies
1.2k
views
Better way to find head to head GRanges?
promoter
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.2k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 5.1 years ago by
Hervé Pagès
16k • written 5.1 years ago by
eggrandio
• 0
0
votes
0
replies
877
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.3 years ago
bharata1803
▴ 60
0
votes
0
replies
1.3k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
5.5 years ago
Wojeff
• 0
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.0 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
1.9k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 6.1 years ago by
Hervé Pagès
16k • written 6.1 years ago by
rbenel
▴ 40
1
vote
2
replies
1.1k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 7.8 years ago by
Alejandro Reyes
★ 1.9k • written 7.8 years ago by
joan.hooper
• 0
1
vote
6
replies
1.8k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
2.5k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.3 years ago by
Robert Castelo
★ 3.1k • written 8.3 years ago by
efoss
▴ 10
2
votes
2
replies
1.4k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
lidia.mateo
▴ 30
11 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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James W. MacDonald
65k
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Pierre Lindenbaum
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Gordon Smyth
50k
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Jenny Drnevich
★ 2.0k
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