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promoter
•
reset
0
votes
2
replies
1.0k
views
Failed to get promoters using promoters() in R 4.0.3.
promoter
GenomicRanges
rtracklayer
GRanges
2.6 years ago
Arslan
• 0
3
votes
6
replies
1.2k
views
Better way to find head to head GRanges?
promoter
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Charles Plessy
▴ 180
1
vote
3
replies
1.2k
views
Obtain coordinates of 5' upstream region up to closest coding region
r
granges
promoter
updated 5.1 years ago by
Hervé Pagès
16k • written 5.1 years ago by
eggrandio
• 0
0
votes
0
replies
893
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.4 years ago
bharata1803
▴ 60
0
votes
0
replies
1.3k
views
GenomicFeatures: How to extract a gene's upstream region of TSS up to the end position of the flanking (nearby) gene.
genomicranges
genomicfeatures
promoter
upstream_flank
5.6 years ago
Wojeff
• 0
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.1 years ago
Ryan C. Thompson
★ 7.9k
1
vote
5
replies
1.9k
views
Extract genomic features from a TxDb-like object
TxDB
genomicfeatures
promoter
getpromoterseq
updated 6.1 years ago by
Hervé Pagès
16k • written 6.1 years ago by
rbenel
▴ 40
1
vote
2
replies
1.1k
views
DEXseq for alternate promoter usage
dexseq
promoter
utr
updated 7.8 years ago by
Alejandro Reyes
★ 1.9k • written 7.8 years ago by
joan.hooper
• 0
1
vote
6
replies
1.8k
views
problem creating txdb object and bsgenome for solanum pennellii
bsgenome
txdb
promoter
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
sekawaiwai2006
▴ 20
2
votes
2
replies
2.6k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.4 years ago by
Robert Castelo
★ 3.2k • written 8.4 years ago by
efoss
▴ 10
2
votes
2
replies
1.4k
views
promoter definition in VariantAnnotation
VariantAnnotation
promoter
drosophila melanogaster
updated 9.3 years ago by
Valerie Obenchain
★ 6.8k • written 9.3 years ago by
lidia.mateo
▴ 30
11 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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