Showing : prostate • reset
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4
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1.6k
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R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Breast Prostate probe Category xps Annotation Normalization xps
updated 12.7 years ago by ★ 3.9k • written 12.7 years ago by ▴ 80
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3
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1.5k
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limma design (paired and factorial?)
Cancer Prostate limma Cancer Prostate limma
updated 11.4 years ago by 50k • written 11.4 years ago by ▴ 30
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2
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1.3k
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ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 11.1 years ago by ▴ 10 • written 11.1 years ago by ★ 4.3k
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2
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1.9k
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GEOquery Meta
Cancer Prostate Cancer Prostate
updated 13.9 years ago by 21k • written 13.9 years ago by ▴ 340
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2
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1.3k
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LOH analysis for illumina data
SNP Cancer Prostate SNP Cancer Prostate
15.7 years ago Yu Chuan Tai ▴ 440
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2
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1.2k
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overview function of made4
Cancer Prostate Cancer Prostate
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 60
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2
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1.1k
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cDNA raw data
Cancer Prostate affy Cancer Prostate affy
updated 19.3 years ago by 21k • written 19.3 years ago by ▴ 600
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1
reply
960
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Pairwise Comparison error
Prostate PROcess Prostate PROcess
updated 13.4 years ago by 65k • written 13.4 years ago by ▴ 40
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1
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1.2k
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Changes in siggenes?
Prostate hgu133a2 probe affy siggenes ASSIGN Prostate hgu133a2 probe affy siggenes
updated 14.3 years ago by ▴ 900 • written 14.3 years ago by ▴ 10
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1
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1.1k
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PCR efficiency correction with HTqPCR
qPCR GO Prostate HTqPCR qPCR GO Prostate HTqPCR
updated 12.6 years ago by ★ 2.0k • written 12.6 years ago by ▴ 20
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1
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1.2k
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How to cluster genes based on their GO term in Arabidopsis?
GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles
updated 13.8 years ago by 65k • written 13.8 years ago by ▴ 280
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810
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.2 years ago • updated 3.8 years ago Daniel Brewer ▴ 100
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1.1k
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Comparision of expression values from 4 different studies
Microarray Cancer Prostate Microarray Cancer Prostate
19.2 years ago Margaret Gardiner-Garden ▴ 160
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1.8k
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PRO-NEST postdoc position PHILIPS RESEARCH. prostate cancer functional biomarker validation (www.pro-nest.com)
Cancer Prostate Cancer Prostate
14.8 years ago Paul Hammer ▴ 220
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1.5k
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I: R: R: R: Probe-level analysis of exon arrays using xps
Annotation Normalization Preprocessing Breast Prostate probe GLAD Category xps Annotation
12.6 years ago Lavorgna Giovanni ▴ 80
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914
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limma suitability for correlated data
Microarray Prostate probe limma Microarray Prostate probe limma
12.6 years ago Max Mariasegaram ▴ 20
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1.2k
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[Job] Functional genomic analysis of cancer/RNAi screening
Transcription Sequencing Genetics Pathways Cancer Prostate Transcription Sequencing Cancer
12.5 years ago Sean Davis 21k
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Questions regarding 'specond' r-program library package
Kidney Lung Prostate probe SpeCond Kidney Lung Prostate probe SpeCond
10.4 years ago Florence Cavalli ▴ 50
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1.3k
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Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
9.5 years ago Andy Lynch ▴ 120
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Job: 2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd NGS cancer prostate Job
8.2 years ago Daniel Brewer ▴ 100
20 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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