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psichomics
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Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
3.5 years ago
noahhelton98
▴ 20
1 result • Page
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It is dependent on the other samples in the dataset.
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*"This worked really well for brain but has not work as well for lung as I get #N/A for many padj"* See the vignette for the cause of th…
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Starting from the very top, do you understand the error? You need to provide sample info that matches 1-to-1 the columns of the counts matr…
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Not a problem. However, if the values are very large (eg 1e6) or very small (eg 1e-6), it's a good idea to center and scale the variable…
Comment: FilterByExpr low counts with small sample size
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Jonathan
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Usually I run `voomLmFit`, although in order to create the mean-variance trend plots for this particular post, I ran `voom`; I've checked -…
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Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
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