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combine two differential expression methods
edger
deseq2
dea
publish
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
roser.navarro
• 0
3
votes
0
replies
2.2k
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News:
BMC Source Code for Biology and Medicine: R/Bioconductor Workflows Section is calling for papers
workflows
publish
News
8.6 years ago
Levi Waldron
★ 1.1k
4
votes
6
replies
2.7k
views
HTMLReport of DESeq2 results with Ensembl Gene Ids
reportingtools
publish
deseq2
updated 9.0 years ago by
Federico Marini
▴ 150 • written 9.3 years ago by
noushin.farnoud
• 0
2
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2
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1.6k
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Error with Reporting Tool and DESeq2
publish
deseq2
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
noushin.farnoud
• 0
4 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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