Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
pvalue
•
reset
0
votes
2
replies
499
views
RNA-Seq p value range variation
DESeq2
pvalue
RNA-Seq
7 months ago
paul.meraner
• 0
1
vote
12
replies
2.2k
views
How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison
DESeq2
InteractionSet
pvalue
15 months ago • updated 14 months ago
paria.alipour
• 0
0
votes
0
replies
834
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue
logFC
lrtest
MAST
2.1 years ago
Tadeoye
▴ 20
0
votes
1
reply
1.8k
views
values (NA) in p value Deseq2 (reopen)
pvalue
NA
R
DESeq2
updated 3.5 years ago by
ATpoint
★ 4.8k • written 3.5 years ago by
Johan Largo
• 0
1
vote
2
replies
1.1k
views
How to understand the P-value generated by DEseq2
pValue
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
Kai_Qi
▴ 20
0
votes
6
replies
2.1k
views
DEXSeq dispersion outlier
DEXSeq
dispersion
pvalue
6.0 years ago
fiona.dick91
▴ 60
1
vote
6
replies
2.0k
views
Zero pvalues after lfcShrink of DESeq2 package
deseq2
pvalue
lfcshrink
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
peibo_xu
▴ 10
1
vote
5
replies
3.5k
views
Why the p value and logFC calculated by limma is so small
limma
volcanoplot
pvalue
logFC
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
xingxd16
▴ 20
0
votes
9
replies
16k
views
How to generate a volcano plot when p-values from DESeq2 are zero?
deseq2
pvalue
visualization
enhancedvolcano
rnaseq
written 6.3 years ago by
ricardo3889
• 0
4
votes
7
replies
3.2k
views
edgeR DEG glmQLFTest
glmQLFTest
pvalue
updated 6.3 years ago by
Gordon Smyth
52k • written 6.3 years ago by
zhang.jianhai
▴ 10
0
votes
3
replies
1.1k
views
p-values smaller than machine epsilon in DESeq2
deseq2
pvalue
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
oscarf
• 0
9
votes
5
replies
6.2k
views
Finding DE genes from RNA-seq data
edgeR
pvalue
qvalue
fpkm
differential gene expression
updated 6.6 years ago by
Steve Lianoglou
★ 13k • written 6.6 years ago by
Harrisonesmith
• 0
4
votes
4
replies
2.2k
views
What doest this p.value distribution mean?
deseq2
pvalue
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
chipolino
• 0
1
vote
1
reply
1.5k
views
fdrtool corrected p-value histograms look weird
pvalue
adjusted pvalue
fdrtool
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
hele7
▴ 20
2
votes
2
replies
2.6k
views
How to control p-value inflation with limma
limma
pvalue
inflation
bacon
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
stephane.cauchi
▴ 10
1
vote
1
reply
3.6k
views
Q value obtained from QValue package is lower than P value?
qvalue
pvalue
r
multiple comparisons
updated 8.3 years ago by
Storey, John D.
▴ 100 • written 8.3 years ago by
tombernardryan
▴ 60
0
votes
1
reply
1.5k
views
meta analysis of clc output(differential expression data )
rnaseq
metaseq
clc output
pvalue
meta analysis
updated 8.4 years ago by
Koki
▴ 10 • written 8.4 years ago by
hassangiahi
• 0
2
votes
10
replies
13k
views
adjusted p-values and p-values problems!
pvalue
adjusted pvalue
r
bonferroni
rna-seq
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
fromhj304
▴ 10
2
votes
4
replies
1.4k
views
ResrtingTools include pvalue NA
reportingtools
deseq2
NA
pvalue
updated 8.9 years ago by
Michael Love
43k • written 8.9 years ago by
NMostajo
▴ 10
0
votes
8
replies
2.1k
views
ReportingTools include pvalue NA and comparissons
R
reportingtools
deseq2
pvalue
coef
updated 8.9 years ago by
Michael Love
43k • written 8.9 years ago by
NMostajo
▴ 10
4
votes
1
reply
2.4k
views
Very low EdgeR Pvalues with very small sample size
edger
pvalue
sample size
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Venu Pullabhatla
▴ 40
6
votes
8
replies
7.2k
views
Does limma calculate pvalues using log2 fold changes or with linear values?
limma
pvalue
log2fc
log2
updated 2.5 years ago by
James W. MacDonald
68k • written 9.1 years ago by
serpalma.v
▴ 60
7
votes
11
replies
4.5k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq
dmr
ttest
pvalue
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
enricoferrero
▴ 680
1
vote
2
replies
1.8k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund
pvalue
adjusted pvalue
qvalue
updated 9.3 years ago by
James W. MacDonald
68k • written 9.3 years ago by
Sameet Mehta
▴ 30
0
votes
0
replies
1.3k
views
pvalRRHO() does not compute the p-value
RRHO
rank
pvalue
9.7 years ago
aurelien
▴ 10
1
vote
3
replies
2.1k
views
confusing output from EdgeR Glm
edger
logfc
pvalue
updated 9.7 years ago by
Aaron Lun
★ 28k • written 9.7 years ago by
amoltej
▴ 10
4
votes
5
replies
3.2k
views
Is it sensable to use p-value detection in illumina bead array as present, absent or marginal call
illumina
pvalue
updated 9.9 years ago by
svlachavas
▴ 840 • written 9.9 years ago by
Agaz Hussain Wani
▴ 260
27 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
sloperun3az
• 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash
by
sloperun3az
• 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr
by
Paul Harrison
▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Geoff
• 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
Awards
• All
Scholar
to
James W. MacDonald
68k
Popular Question
to
Gordon Smyth
52k
Scholar
to
Hervé Pagès
16k
Popular Question
to
Bine
▴ 50
Popular Question
to
RobKo
▴ 10
Locations
• All
Seattle, WA, United States,
48 minutes ago
Denmark,
51 minutes ago
United States,
56 minutes ago
Barcelona, Spain,
57 minutes ago
United States,
1 hour ago
Traffic: 838 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6