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pvca
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pvca error (Error in Data$variables : $ operator is invalid for atomic vectors)
pvca
biobase
updated 8.6 years ago by
erflynn
• 0 • written 8.9 years ago by
a.riedel
• 0
0
votes
3
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1.8k
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edgeR GLM to adjust for batch effect
edgeR
pvca
edgeR
pvca
updated 10.0 years ago by
Ryan C. Thompson
★ 7.9k • written 10.0 years ago by
Guest User
★ 13k
0
votes
0
replies
717
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Interpretation of PVCA result and what to correct for
pvca
batch effect
batch effect correction
5.4 years ago
Sebastian Hesse
▴ 70
0
votes
1
reply
529
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Help needed to run PVCA
pvca
updated 14 months ago by
James W. MacDonald
65k • written 14 months ago by
jyotsna.rao
• 0
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
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mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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