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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif
scanning
enrich_motifs
PWM
2.2 years ago
alexandre.blais
▴ 50
2
votes
0
replies
1.5k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 5.2 years ago by
Bioconductor Community
0 • written 5.3 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
756
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.3 years ago
rbronste
▴ 60
2
votes
1
reply
2.2k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 6.5 years ago by
Ge Tan
▴ 20 • written 6.5 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
1.2k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 7.4 years ago by
Marcel Ramos
690 • written 7.4 years ago by
clausdkuhn
• 0
0
votes
0
replies
833
views
maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings
pwm
7.6 years ago
Stefanie Tauber
▴ 40
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.4 years ago
vinod.acear
▴ 50
7 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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