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pwm
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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif
scanning
enrich_motifs
PWM
2.8 years ago
alexandre.blais
▴ 50
2
votes
0
replies
1.9k
views
motifDb PFM vs JASPAR database PFM: conversion to PWM
pwm
pfm
jaspar
motifdb
updated 5.8 years ago by
Bioconductor Community
0 • written 6.0 years ago by
chrisclarkson100
▴ 50
0
votes
0
replies
912
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.9 years ago
rbronste
▴ 60
2
votes
1
reply
2.5k
views
Error: unable to find an inherited method for function searchSeq for signature matrix
pwm
tfbstools
jaspar
updated 7.1 years ago by
Ge Tan
▴ 20 • written 7.1 years ago by
chrisclarkson100
▴ 50
0
votes
1
reply
1.4k
views
PWM with columns that add up to 1
biostrings
seqlogo
pwm
updated 8.0 years ago by
Marcel Ramos
700 • written 8.0 years ago by
clausdkuhn
• 0
0
votes
0
replies
960
views
maxScore calculation for 'log2probratio' and 'prob' type PWMs
biostrings
pwm
8.2 years ago
Stefanie Tauber
▴ 40
0
votes
3
replies
1.6k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
9.0 years ago
vinod.acear
▴ 50
7 results • Page
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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Answer: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
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A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
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