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pwmenrich
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630
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
5.2 years ago
intregen
• 0
0
votes
0
replies
717
views
makeBackground error message "Sequence only contain N's"
pwmenrich
5.9 years ago
gdeniz
• 0
0
votes
1
reply
759
views
subsetting PWMLognBackground object in the PWMEnrich package
PWMEnrich
6.1 years ago • updated 6.0 years ago
amanda.joy.price
• 0
0
votes
0
replies
669
views
PWMEnruch: Error in getPromoters(organism)
r
pwmenrich
6.2 years ago
prp291
• 0
0
votes
1
reply
1.8k
views
Convert HOMER motif matrix to pfm?
homer
pwmenrich
updated 7.6 years ago by
Ou, Jianhong
★ 1.3k • written 7.6 years ago by
sarah.blackstone7734
• 0
0
votes
0
replies
965
views
question about motif enrichment analysis using PWMenrich
PWMenrich
7.6 years ago
sekawaiwai2006
▴ 20
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.0 years ago by
Robert Stojnic
▴ 50 • written 8.0 years ago by
sekawaiwai2006
▴ 20
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.0 years ago
enricoferrero
▴ 660
0
votes
3
replies
1.4k
views
motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb
matchpwm
motif
pwmenrich
pwm
8.4 years ago
vinod.acear
▴ 50
0
votes
1
reply
2.2k
views
non-numeric argument to binary operator error with makeBackground() in PWMEnrich
pwmenrich
MotifDB
updated 8.4 years ago by
Robert Stojnic
▴ 50 • written 8.4 years ago by
elliott77
• 0
2
votes
1
reply
1.0k
views
[PWMEnrich] Enrichment p-values on human sequences
pwmenrich
log
updated 8.6 years ago by
Robert Stojnic
▴ 50 • written 8.6 years ago by
enricoferrero
▴ 660
1
vote
3
replies
1.4k
views
getBackgroundFrequencies for Arabidopsis
pwmenrich
bsgenome
8.6 years ago
oliwindram
▴ 10
0
votes
5
replies
2.4k
views
Motif enrichment analysis: Error in transfac format and background frequencies from BSGenome
BSgenome
convert
BSgenome
PWMEnrich
MotifDb
updated 9.6 years ago by
Robert Stojnic
▴ 80 • written 9.6 years ago by
deepti anand
▴ 50
0
votes
0
replies
759
views
PWMEnrich::sequenceReport() and 'res' global variable
PWMEnrich
PWMEnrich
9.7 years ago
enricoferrero
▴ 660
0
votes
8
replies
1.6k
views
plotpfm has been removed in PWMEnrich?
PWMEnrich
PWMEnrich
updated 10.3 years ago by
Robert Stojnic
▴ 80 • written 10.3 years ago by
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
PWMEnrich binding site position
PWMEnrich
PWMEnrich
updated 10.6 years ago by
Robert Stojnic
▴ 50 • written 10.6 years ago by
Guest User
★ 13k
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Answer: WGCNA: analysis of complex trait associations with regressions
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
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Yes that is correct
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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