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3
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4
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917
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seq2pathway error on Mac OS X
seq2pathway error python mac os x
5.9 years ago termanini ▴ 10
5
votes
23
replies
2.9k
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Convertion of indexed bam file to tsv file format
python samtools
updated 5.8 years ago by 15k • written 5.8 years ago by • 0
0
votes
1
reply
64
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python and R
snpeff python tophat r RNAseq123
updated 4 days ago by 3.2k • written 4 days ago by • 0
1
vote
1
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287
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Python functionality feature request
python bioconductor
updated 3.0 years ago by 25k • written 3.0 years ago by • 0
2
votes
4
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328
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 23 months ago by ▴ 30 • written 23 months ago by • 0
1
vote
2
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220
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
15 months ago • updated 14 months ago Raito92 ▴ 50
1
vote
1
reply
261
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Load data with rhdf5
rhdf5 python
15 months ago jose.wo • 0
5
votes
0
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818
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Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
4.3 years ago Shamith.Samarajiwa ▴ 180
2
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0
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604
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
3.5 years ago ematsen ▴ 20
0
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0
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495
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Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
3.4 years ago EMBL Recruitment • 0
0
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0
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124
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Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
12 weeks ago Ewa • 0
0
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0
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429
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
3.0 years ago l.brown ▴ 10
0
votes
0
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362
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Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
2.5 years ago careers • 0
0
votes
0
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311
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Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
2.3 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
322
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Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
23 months ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.0k
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Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
6.1 years ago careers • 0
0
votes
0
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841
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
5.8 years ago Fiona ▴ 70
0
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0
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1.1k
views
Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
5.5 years ago Doe, Aimee ▴ 40
0
votes
0
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1.2k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
5.3 years ago • updated 5.0 years ago clif.duhn • 0
0
votes
0
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852
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
5.0 years ago clif.duhn • 0
20 results • Page 1 of 1
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Answer: Compilation fatal error: iostream.h: No such file or directory when installing R by Kevin Blighe 3.2k
It is likely that you need to install the libraries on your Ubuntu OS outside R, via: apt-get install libhdf5-dev Note: use `sudo` if…
Comment: Combining HTSeq and RNA-SeQ for differential analysis by szomolay • 0
The disease data is from TCGA and the normal data is from GTEx. I am trying to do DE analysis and I am aware of the Xena portal where log2(…
Comment: Problems with installation of 'phyloseq by Kevin Blighe 3.2k
What messages do you receive when you try to install the *GenomeInfoDbData* package?
Answer: derfinder model.matrix with limma or single base-level F-statistics analysis by Leonardo Collado Torres ▴ 890
Hi, Can you provide an example that breaks? The following R code works for me: ```R library("derfinder") set.seed(20210801) pheno …
Comment: Combining HTSeq and RNA-SeQ for differential analysis by ATpoint ▴ 710
The fact that you don't have raw data indicate that disease and healthy conditions come from different datasets or studies, hence there is …
Votes
A: DESeq2: multiple conditions design -- How to select subset comparisons from the
Comment: Idea: Using DESeq2 to test a change in ratio of two genes
A: Normalized counts of DESeq2 affected by design formula?
A: Finding orthologous human/mouse ENSEMBL IDs
Comment: What are these genes ? [How to get Ensembl IDs for them]
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