Showing : python • reset
3
votes
4
replies
1.1k
views
seq2pathway error on Mac OS X
seq2pathway error python mac os x
6.9 years ago termanini ▴ 10
5
votes
23
replies
3.9k
views
Convertion of indexed bam file to tsv file format
python samtools
updated 6.8 years ago by 15k • written 6.8 years ago by • 0
0
votes
1
reply
307
views
python and R
snpeff python tophat r RNAseq123
updated 12 months ago by 3.6k • written 12 months ago by • 0
1
vote
1
reply
406
views
Python functionality feature request
python bioconductor
updated 4.0 years ago by 25k • written 4.0 years ago by • 0
2
votes
4
replies
506
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R python normalization matrix
updated 3.0 years ago by ▴ 30 • written 3.0 years ago by ▴ 10
1
vote
2
replies
609
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
2.3 years ago Raito92 ▴ 60
1
vote
1
reply
528
views
Load data with rhdf5
rhdf5 python
2.3 years ago jose.wo • 0
0
votes
1
reply
220
views
Change the interval of bed file
mappability bed python
updated 6 months ago by 60k • written 6 months ago by • 0
2
votes
0
replies
753
views
Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
4.5 years ago ematsen ▴ 20
0
votes
0
replies
643
views
Job: Bioinformatics Engineer / Data Analyst
python bio ngs linux Job
4.4 years ago EMBL Recruitment • 0
0
votes
0
replies
332
views
Job: Senior Data Engineer | Poland | remote
AWS BigData Engineer python
15 months ago Ewa • 0
0
votes
0
replies
591
views
Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job rna-seq chipseq gsea python Job
4.0 years ago l.brown ▴ 10
0
votes
0
replies
521
views
Job: Bioinformatics Scientist II
bioinformatics scientist python computational Job
3.5 years ago careers • 0
0
votes
0
replies
454
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
3.4 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
473
views
Job: Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS BIOINFORMATICS SEATTLE R PYTHON Job
3.0 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
1.2k
views
Job: Calling all Clinical Genomic Scientist
computational biology genomics genetics Python java Job
7.1 years ago careers • 0
0
votes
0
replies
986
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq splicing python SAM
6.8 years ago Fiona ▴ 70
0
votes
0
replies
1.2k
views
Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
6.5 years ago Doe, Aimee ▴ 40
0
votes
0
replies
1.4k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
6.3 years ago • updated 6.0 years ago clif.duhn • 0
0
votes
0
replies
976
views
Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
6.0 years ago clif.duhn • 0
5
votes
0
replies
955
views
Job: Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R python deep learning machine learning cancer genomics Job
5.4 years ago • updated 5.3 years ago Shamith.Samarajiwa ▴ 180
21 results • Page 1 of 1
Recent ...
Replies
Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
Awards • All
Popular Question to Alejandro Reyes ★ 1.8k
Popular Question to Leonardo Collado Torres ▴ 1000
Scholar to ATpoint ★ 1.4k
Scholar to voogd.o ▴ 10
Popular Question to Bumble ▴ 10
Locations • All
WEHI, Melbourne, Australia, 1 minute ago
Canada, 8 minutes ago
United States, 17 minutes ago
Los Angeles, 53 minutes ago
United States, 58 minutes ago
Traffic: 254 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6