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python
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3
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4
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seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
6.9 years ago
termanini
▴ 10
5
votes
23
replies
3.9k
views
Convertion of indexed bam file to tsv file format
python
samtools
updated 6.8 years ago by
Hervé Pagès
15k • written 6.8 years ago by
malikbashirkhan2
• 0
0
votes
1
reply
307
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 12 months ago by
Kevin Blighe
3.6k • written 12 months ago by
kusum
• 0
1
vote
1
reply
406
views
Python functionality feature request
python
bioconductor
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
quijotejmartinez
• 0
2
votes
4
replies
506
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R
python
normalization
matrix
updated 3.0 years ago by
shahryary
▴ 30 • written 3.0 years ago by
mohammedtoufiq91
▴ 10
1
vote
2
replies
609
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
2.3 years ago
Raito92
▴ 60
1
vote
1
reply
528
views
Load data with rhdf5
rhdf5
python
2.3 years ago
jose.wo
• 0
0
votes
1
reply
220
views
Change the interval of bed file
mappability
bed
python
updated 6 months ago by
James W. MacDonald
60k • written 6 months ago by
the
• 0
2
votes
0
replies
753
views
Job:
Full-time bioinformatics instructor position at Fred Hutch
R
shell
Python
SQL
Job
4.5 years ago
ematsen
▴ 20
0
votes
0
replies
643
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
4.4 years ago
EMBL Recruitment
• 0
0
votes
0
replies
332
views
Job:
Senior Data Engineer | Poland | remote
AWS
BigData
Engineer
python
15 months ago
Ewa
• 0
0
votes
0
replies
591
views
Job:
2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job
rna-seq
chipseq
gsea
python
Job
4.0 years ago
l.brown
▴ 10
0
votes
0
replies
521
views
Job:
Bioinformatics Scientist II
bioinformatics
scientist
python
computational
Job
3.5 years ago
careers
• 0
0
votes
0
replies
454
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
3.4 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
473
views
Job:
Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS
BIOINFORMATICS
SEATTLE
R
PYTHON
Job
3.0 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.2k
views
Job:
Calling all Clinical Genomic Scientist
computational biology
genomics
genetics
Python
java
Job
7.1 years ago
careers
• 0
0
votes
0
replies
986
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
6.8 years ago
Fiona
▴ 70
0
votes
0
replies
1.2k
views
Job:
Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics
data science
python
SQL
Job
6.5 years ago
Doe, Aimee
▴ 40
0
votes
0
replies
1.4k
views
Job:
Bioinformatics Programmer (Statistician) at University of California at San Francisco
R
bioinformatician job
Perl
Python
statistics
Job
6.3 years ago • updated 6.0 years ago
clif.duhn
• 0
0
votes
0
replies
976
views
Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
6.0 years ago
clif.duhn
• 0
5
votes
0
replies
955
views
Job:
Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R
python
deep learning
machine learning
cancer genomics
Job
5.4 years ago • updated 5.3 years ago
Shamith.Samarajiwa
▴ 180
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Comment: unable to install.packages("spatialLIBD")
by
Leonardo Collado Torres
▴ 1000
All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…
Answer: how to use Rsamtools to parse extra fields from STAR alignment
by
Martin Morgan
25k
The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Delta._.43
▴ 10
Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
by
Alejandro Reyes
★ 1.8k
Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…
Answer: spot- vs cell-level data access
by
Leonardo Collado Torres
▴ 1000
Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…
Votes
Answer: spot- vs cell-level data access
Answer: unable to install.packages("spatialLIBD")
Comment: unable to install.packages("spatialLIBD")
error running UniProt.ws
Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU
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