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python
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TnSeq as ZINB? Alternatives in R?
DESeq2
R
edgeR
Python
TnSeq
updated 16 months ago by
chaco001
• 0 • written 17 months ago by
David R
▴ 90
1
vote
0
replies
788
views
Job:
Bioconductor Core developers group opening
R
cloud
github
python
git
19 months ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
888
views
Change the interval of bed file
mappability
bed
python
updated 2.2 years ago by
James W. MacDonald
65k • written 2.3 years ago by
the
• 0
0
votes
1
reply
804
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 2.7 years ago by
Kevin Blighe
★ 3.9k • written 2.7 years ago by
kusum
• 0
0
votes
0
replies
823
views
Job:
Senior Data Engineer | Poland | remote
AWS
BigData
Engineer
python
3.0 years ago
Ewa
• 0
1
vote
2
replies
1.5k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq
python
gtf
gff3
annotation
4.0 years ago • updated 3.9 years ago
Raito92
▴ 60
1
vote
2
replies
1.3k
views
Load data with rhdf5
rhdf5
python
updated 14 months ago by
alex46015
• 0 • written 4.0 years ago by
jose.wo
• 0
2
votes
4
replies
1.1k
views
Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
R
python
normalization
matrix
updated 4.7 years ago by
shahryary
▴ 30 • written 4.7 years ago by
mohammedtoufiq91
▴ 10
0
votes
0
replies
935
views
Job:
Bioinformatics Analyst II, Genomics Shared Resource (Seattle, WA)
GENOMICS
BIOINFORMATICS
SEATTLE
R
PYTHON
Job
4.7 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
840
views
Job:
Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R
Python
Computational-Biology
Cancer
Job
5.0 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.0k
views
Job:
Bioinformatics Scientist II
bioinformatics
scientist
python
computational
Job
5.2 years ago
careers
• 0
0
votes
0
replies
1.0k
views
Job:
2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
bioinformatician job
rna-seq
chipseq
gsea
python
Job
5.7 years ago
l.brown
▴ 10
1
vote
1
reply
776
views
Python functionality feature request
python
bioconductor
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
quijotejmartinez
• 0
0
votes
0
replies
1.2k
views
Job:
Bioinformatics Engineer / Data Analyst
python
bio
ngs
linux
Job
6.1 years ago
EMBL Recruitment
• 0
2
votes
0
replies
1.2k
views
Job:
Full-time bioinformatics instructor position at Fred Hutch
R
shell
Python
SQL
Job
6.2 years ago
ematsen
▴ 20
5
votes
0
replies
1.4k
views
Job:
Summer Studentships in Data Science (Computational Cancer Biology) at the University of Cambridge
R
python
deep learning
machine learning
cancer genomics
Job
7.0 years ago
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
1.4k
views
Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.8k
views
Job:
Bioinformatics Programmer (Statistician) at University of California at San Francisco
R
bioinformatician job
Perl
Python
statistics
Job
8.0 years ago • updated 7.7 years ago
clif.duhn
• 0
0
votes
0
replies
1.9k
views
Job:
Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics
data science
python
SQL
Job
8.2 years ago
Doe, Aimee
▴ 40
5
votes
23
replies
6.2k
views
Convertion of indexed bam file to tsv file format
python
samtools
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
malikbashirkhan2
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
3
votes
4
replies
1.6k
views
seq2pathway error on Mac OS X
seq2pathway
error
python
mac os x
8.6 years ago
termanini
▴ 10
0
votes
0
replies
1.6k
views
Job:
Calling all Clinical Genomic Scientist
computational biology
genomics
genetics
Python
java
Job
8.8 years ago
careers
• 0
23 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Robert Castelo
★ 3.2k
Popular Question
to
James W. MacDonald
65k
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shepherl
3.8k
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to
BioinfGuru
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Gordon Smyth
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